miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3582 5' -62.4 NC_001650.1 + 6903 0.79 0.114973
Target:  5'- aGCCCuUGGCCCAAUGGGGGCcGaggggguacuaCCAu -3'
miRNA:   3'- -CGGGuACCGGGUUACCCCCGaCg----------GGU- -5'
3582 5' -62.4 NC_001650.1 + 6996 0.71 0.355233
Target:  5'- uCCCAgUGGCCCAAUGGGGGauaagggggGaCCUg -3'
miRNA:   3'- cGGGU-ACCGGGUUACCCCCga-------C-GGGu -5'
3582 5' -62.4 NC_001650.1 + 7037 0.78 0.127048
Target:  5'- aGCCCccUGGCCCAAUGGGuGGCagggGCCUu -3'
miRNA:   3'- -CGGGu-ACCGGGUUACCC-CCGa---CGGGu -5'
3582 5' -62.4 NC_001650.1 + 7147 0.74 0.254923
Target:  5'- aGCCCAUGaCCCAAUGGGGauacccGCUGCa-- -3'
miRNA:   3'- -CGGGUACcGGGUUACCCC------CGACGggu -5'
3582 5' -62.4 NC_001650.1 + 7227 0.66 0.633039
Target:  5'- uCCCAUa-CCCAAUGGGGGCucagguUGCUgGg -3'
miRNA:   3'- cGGGUAccGGGUUACCCCCG------ACGGgU- -5'
3582 5' -62.4 NC_001650.1 + 7259 1.05 0.001628
Target:  5'- aGCCCAUGGCCCAAUGGGGGCUGUCCAc -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCCGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 7339 0.66 0.633039
Target:  5'- uCCCAUa-CCCAAUGGGGGCucagguUGCUgGg -3'
miRNA:   3'- cGGGUAccGGGUUACCCCCG------ACGGgU- -5'
3582 5' -62.4 NC_001650.1 + 7371 0.94 0.010468
Target:  5'- aGCCCAUGGCCCAAUGGGGaCUGUCCAc -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCcGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 7482 0.83 0.054834
Target:  5'- uCCCGgcGGCCCAAUGGGGGCUaCCCAc -3'
miRNA:   3'- cGGGUa-CCGGGUUACCCCCGAcGGGU- -5'
3582 5' -62.4 NC_001650.1 + 7605 1.02 0.002427
Target:  5'- aGCCCGUGGCCCAAUGGGGGCUGuCCCAc -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCCGAC-GGGU- -5'
3582 5' -62.4 NC_001650.1 + 7717 0.98 0.005112
Target:  5'- aGCCCGUGGCCCAAUGGGGGCUaCCCAc -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCCGAcGGGU- -5'
3582 5' -62.4 NC_001650.1 + 7827 0.69 0.480308
Target:  5'- cCCUAUcGCCCAAUGGcGGGCcaCCCAc -3'
miRNA:   3'- cGGGUAcCGGGUUACC-CCCGacGGGU- -5'
3582 5' -62.4 NC_001650.1 + 7911 0.68 0.498598
Target:  5'- cCCCA---CCCAAUGGGGGCucggguUGCCUg -3'
miRNA:   3'- cGGGUaccGGGUUACCCCCG------ACGGGu -5'
3582 5' -62.4 NC_001650.1 + 7946 0.68 0.517192
Target:  5'- aGCaCCcgGGCCCAAUGGGGaCcuUCCAc -3'
miRNA:   3'- -CG-GGuaCCGGGUUACCCCcGacGGGU- -5'
3582 5' -62.4 NC_001650.1 + 8119 0.69 0.489413
Target:  5'- aGCCCcucuGCCCAAUGGGaacuuaGGUUGCCgGg -3'
miRNA:   3'- -CGGGuac-CGGGUUACCC------CCGACGGgU- -5'
3582 5' -62.4 NC_001650.1 + 8165 0.74 0.25434
Target:  5'- gGCCCcgugGUgauuacacacgggGGCCCAAUGGGGGaUGUCCAc -3'
miRNA:   3'- -CGGG----UA-------------CCGGGUUACCCCCgACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 8246 0.66 0.612462
Target:  5'- gGCCUGUGgguauuacucaauGCCCAGUGGGgucucucuGGUUGCCa- -3'
miRNA:   3'- -CGGGUAC-------------CGGGUUACCC--------CCGACGGgu -5'
3582 5' -62.4 NC_001650.1 + 11670 0.68 0.50693
Target:  5'- uGCCCAcucuuucucuguuUGaCCCAuagaGGGGGC-GCCCAg -3'
miRNA:   3'- -CGGGU-------------ACcGGGUua--CCCCCGaCGGGU- -5'
3582 5' -62.4 NC_001650.1 + 14138 0.7 0.394326
Target:  5'- gGCuCCAUGGuCCCGGggguccagGGGGGC-GCCUc -3'
miRNA:   3'- -CG-GGUACC-GGGUUa-------CCCCCGaCGGGu -5'
3582 5' -62.4 NC_001650.1 + 14704 0.66 0.672169
Target:  5'- uGUCCGggGGUCCAA-GGGGGUUGgCa- -3'
miRNA:   3'- -CGGGUa-CCGGGUUaCCCCCGACgGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.