miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3582 5' -62.4 NC_001650.1 + 478 0.69 0.471286
Target:  5'- uGCCCAacucugggagagUGG-CCAAUGGGGaGC-GCCUAu -3'
miRNA:   3'- -CGGGU------------ACCgGGUUACCCC-CGaCGGGU- -5'
3582 5' -62.4 NC_001650.1 + 1285 0.69 0.471286
Target:  5'- aGCCaaugggGGCCC---GGGGGUggGCCCAa -3'
miRNA:   3'- -CGGgua---CCGGGuuaCCCCCGa-CGGGU- -5'
3582 5' -62.4 NC_001650.1 + 1760 0.7 0.41908
Target:  5'- cCCCAUuggccauggaGGCCCuGUGGGaGG-UGCCCAu -3'
miRNA:   3'- cGGGUA----------CCGGGuUACCC-CCgACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 1880 0.69 0.453507
Target:  5'- gGCCCAccgacucccuauUGGCCUAaaaagcucuGUGGGaGG-UGCCCAu -3'
miRNA:   3'- -CGGGU------------ACCGGGU---------UACCC-CCgACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 2750 0.68 0.517192
Target:  5'- gGCCUcuauUGGCCagaggggucAUGGGGGagUGCCCAu -3'
miRNA:   3'- -CGGGu---ACCGGgu-------UACCCCCg-ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 2903 0.88 0.027091
Target:  5'- aGCCCAcccuauUGGCCCAG-GGGGGCUGUCCAu -3'
miRNA:   3'- -CGGGU------ACCGGGUUaCCCCCGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 4224 0.66 0.652634
Target:  5'- cCCCAuuucUGG-CCAAUGGGGacuCUGUCCGu -3'
miRNA:   3'- cGGGU----ACCgGGUUACCCCc--GACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 5850 0.75 0.201829
Target:  5'- aGCCCcgggGGUCUAA-GGGGGCcGCCCAc -3'
miRNA:   3'- -CGGGua--CCGGGUUaCCCCCGaCGGGU- -5'
3582 5' -62.4 NC_001650.1 + 5882 0.76 0.187885
Target:  5'- aCCCAcagaGGgCCAAUGGGGGCUaCCCAc -3'
miRNA:   3'- cGGGUa---CCgGGUUACCCCCGAcGGGU- -5'
3582 5' -62.4 NC_001650.1 + 6048 0.87 0.031713
Target:  5'- uCCCaAUGGCCCAAUGGGGGCcuagggggccUGCCCAc -3'
miRNA:   3'- cGGG-UACCGGGUUACCCCCG----------ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 6061 0.66 0.623237
Target:  5'- cCCCAUugGGCCC----GGGGCuuuauUGCCCAa -3'
miRNA:   3'- cGGGUA--CCGGGuuacCCCCG-----ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 6171 0.77 0.158609
Target:  5'- uCCCAaaGGCCCAAUgggagcuaaGGGGGaCUGCCCAc -3'
miRNA:   3'- cGGGUa-CCGGGUUA---------CCCCC-GACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 6263 0.71 0.340379
Target:  5'- aGCCCcgGGCCCAAUGGGGa----CCGa -3'
miRNA:   3'- -CGGGuaCCGGGUUACCCCcgacgGGU- -5'
3582 5' -62.4 NC_001650.1 + 6352 0.67 0.564782
Target:  5'- cCCCAUGG-CCAAUGaagaccGGGGUUGCUa- -3'
miRNA:   3'- cGGGUACCgGGUUAC------CCCCGACGGgu -5'
3582 5' -62.4 NC_001650.1 + 6394 0.73 0.266829
Target:  5'- uCCCAaaGGCCCAAUGggagcuaaGGGGCacUGCCCAc -3'
miRNA:   3'- cGGGUa-CCGGGUUAC--------CCCCG--ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 6516 0.83 0.056273
Target:  5'- cCCCAUGGCCCAAUagggacccagGGGGaGUUGCCCAc -3'
miRNA:   3'- cGGGUACCGGGUUA----------CCCC-CGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 6558 0.73 0.266829
Target:  5'- uCCCAaaGGCCCAAUGggagcuaaGGGGCacUGCCCAc -3'
miRNA:   3'- cGGGUa-CCGGGUUAC--------CCCCG--ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 6669 1.09 0.000772
Target:  5'- aGCCCAUGGCCCAAUGGGGGCUGCCCAu -3'
miRNA:   3'- -CGGGUACCGGGUUACCCCCGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 6790 0.87 0.03342
Target:  5'- aGCCCAU-GCCCAAUGGGGGCuuagggguacUGCCCAc -3'
miRNA:   3'- -CGGGUAcCGGGUUACCCCCG----------ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 6835 0.67 0.584157
Target:  5'- aCCCAuUGGgCCA--GGGGGCuuuauUGCCCc -3'
miRNA:   3'- cGGGU-ACCgGGUuaCCCCCG-----ACGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.