Results 21 - 40 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3582 | 5' | -62.4 | NC_001650.1 | + | 120051 | 0.66 | 0.633039 |
Target: 5'- uGCCCAgagaUGGUCU--UGGGGGCauaguUGgCCAc -3' miRNA: 3'- -CGGGU----ACCGGGuuACCCCCG-----ACgGGU- -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 14704 | 0.66 | 0.672169 |
Target: 5'- uGUCCGggGGUCCAA-GGGGGUUGgCa- -3' miRNA: 3'- -CGGGUa-CCGGGUUaCCCCCGACgGgu -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 157061 | 0.66 | 0.661436 |
Target: 5'- uGCCCccgagagGUGGUucgauuCCAAUGgcGGGGCUGCugCCAg -3' miRNA: 3'- -CGGG-------UACCG------GGUUAC--CCCCGACG--GGU- -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 147499 | 0.66 | 0.64284 |
Target: 5'- aGCCCAgUGGCCCGucgccGUGGcGGcacGCUGCg-- -3' miRNA: 3'- -CGGGU-ACCGGGU-----UACC-CC---CGACGggu -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 170931 | 0.66 | 0.652634 |
Target: 5'- cCCCAuuucUGG-CCAAUGGGGacuCUGUCCGu -3' miRNA: 3'- cGGGU----ACCgGGUUACCCCc--GACGGGU- -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 7227 | 0.66 | 0.633039 |
Target: 5'- uCCCAUa-CCCAAUGGGGGCucagguUGCUgGg -3' miRNA: 3'- cGGGUAccGGGUUACCCCCG------ACGGgU- -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 14905 | 0.66 | 0.613441 |
Target: 5'- aGgCCAcGGCCCAAcgGGGGuGCUGauguaaCCGc -3' miRNA: 3'- -CgGGUaCCGGGUUa-CCCC-CGACg-----GGU- -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 41606 | 0.66 | 0.64284 |
Target: 5'- uGCCUuuccggGGCCCGGuUGGuGGGUgugugUGUCCAa -3' miRNA: 3'- -CGGGua----CCGGGUU-ACC-CCCG-----ACGGGU- -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 145392 | 0.66 | 0.662413 |
Target: 5'- cUCCAuggggaUGGCCgcGUGGGGGUgguaGCCCu -3' miRNA: 3'- cGGGU------ACCGGguUACCCCCGa---CGGGu -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 70277 | 0.66 | 0.633039 |
Target: 5'- uGCCCAccaucGCCC-AUGGcgacGGGCgcagGCCCAc -3' miRNA: 3'- -CGGGUac---CGGGuUACC----CCCGa---CGGGU- -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 172768 | 0.66 | 0.623237 |
Target: 5'- cCCCAUugGGCCC----GGGGCuuuauUGCCCAa -3' miRNA: 3'- cGGGUA--CCGGGuuacCCCCG-----ACGGGU- -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 6061 | 0.66 | 0.623237 |
Target: 5'- cCCCAUugGGCCC----GGGGCuuuauUGCCCAa -3' miRNA: 3'- cGGGUA--CCGGGuuacCCCCG-----ACGGGU- -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 108823 | 0.66 | 0.613441 |
Target: 5'- -aCC-UGGCCCGcgcGUGGGaGcgggccgugcaGCUGCCCAc -3' miRNA: 3'- cgGGuACCGGGU---UACCC-C-----------CGACGGGU- -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 31015 | 0.66 | 0.662413 |
Target: 5'- gGCC--UGGCUgGGgcgGGGGGC-GCCCu -3' miRNA: 3'- -CGGguACCGGgUUa--CCCCCGaCGGGu -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 30452 | 0.66 | 0.662413 |
Target: 5'- gGCCUuucuggggcGGCUCAG-GGGGGuCUcGCCCAu -3' miRNA: 3'- -CGGGua-------CCGGGUUaCCCCC-GA-CGGGU- -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 7339 | 0.66 | 0.633039 |
Target: 5'- uCCCAUa-CCCAAUGGGGGCucagguUGCUgGg -3' miRNA: 3'- cGGGUAccGGGUUACCCCCG------ACGGgU- -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 50032 | 0.67 | 0.593895 |
Target: 5'- gGCCCG-GGCCUGA-GGGGGCUuugGgUCAa -3' miRNA: 3'- -CGGGUaCCGGGUUaCCCCCGA---CgGGU- -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 6835 | 0.67 | 0.584157 |
Target: 5'- aCCCAuUGGgCCA--GGGGGCuuuauUGCCCc -3' miRNA: 3'- cGGGU-ACCgGGUuaCCCCCG-----ACGGGu -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 146151 | 0.67 | 0.603658 |
Target: 5'- cGCCCG-GGCCgGGcUGGGgcacaGGgaGCCCGg -3' miRNA: 3'- -CGGGUaCCGGgUU-ACCC-----CCgaCGGGU- -5' |
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3582 | 5' | -62.4 | NC_001650.1 | + | 106096 | 0.67 | 0.584157 |
Target: 5'- aGCCCGUGGUCUu-UGGGcGCUcggGCCUg -3' miRNA: 3'- -CGGGUACCGGGuuACCCcCGA---CGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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