miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3582 5' -62.4 NC_001650.1 + 137240 0.66 0.633039
Target:  5'- aGCCCAUGGaccugcacuCCCAGuuUGGGaGG-UGCCUc -3'
miRNA:   3'- -CGGGUACC---------GGGUU--ACCC-CCgACGGGu -5'
3582 5' -62.4 NC_001650.1 + 173934 0.66 0.633039
Target:  5'- uCCCAUa-CCCAAUGGGGGCucagguUGCUgGg -3'
miRNA:   3'- cGGGUAccGGGUUACCCCCG------ACGGgU- -5'
3582 5' -62.4 NC_001650.1 + 7227 0.66 0.633039
Target:  5'- uCCCAUa-CCCAAUGGGGGCucagguUGCUgGg -3'
miRNA:   3'- cGGGUAccGGGUUACCCCCG------ACGGgU- -5'
3582 5' -62.4 NC_001650.1 + 70277 0.66 0.633039
Target:  5'- uGCCCAccaucGCCC-AUGGcgacGGGCgcagGCCCAc -3'
miRNA:   3'- -CGGGUac---CGGGuUACC----CCCGa---CGGGU- -5'
3582 5' -62.4 NC_001650.1 + 7339 0.66 0.633039
Target:  5'- uCCCAUa-CCCAAUGGGGGCucagguUGCUgGg -3'
miRNA:   3'- cGGGUAccGGGUUACCCCCG------ACGGgU- -5'
3582 5' -62.4 NC_001650.1 + 120051 0.66 0.633039
Target:  5'- uGCCCAgagaUGGUCU--UGGGGGCauaguUGgCCAc -3'
miRNA:   3'- -CGGGU----ACCGGGuuACCCCCG-----ACgGGU- -5'
3582 5' -62.4 NC_001650.1 + 136601 0.66 0.623237
Target:  5'- aGCCUAuUGGCagg--GGGGGaggUGCCCAg -3'
miRNA:   3'- -CGGGU-ACCGgguuaCCCCCg--ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 6061 0.66 0.623237
Target:  5'- cCCCAUugGGCCC----GGGGCuuuauUGCCCAa -3'
miRNA:   3'- cGGGUA--CCGGGuuacCCCCG-----ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 172768 0.66 0.623237
Target:  5'- cCCCAUugGGCCC----GGGGCuuuauUGCCCAa -3'
miRNA:   3'- cGGGUA--CCGGGuuacCCCCG-----ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 56866 0.66 0.613441
Target:  5'- aGCCCAUGGCUacugCGcgGGGGGgUcagcuaggagGCCUc -3'
miRNA:   3'- -CGGGUACCGG----GUuaCCCCCgA----------CGGGu -5'
3582 5' -62.4 NC_001650.1 + 45414 0.66 0.613441
Target:  5'- aGCCCGUGGaaccgcgcCCCGgguaucgcuuGUGGGGGUa-CCCGg -3'
miRNA:   3'- -CGGGUACC--------GGGU----------UACCCCCGacGGGU- -5'
3582 5' -62.4 NC_001650.1 + 108823 0.66 0.613441
Target:  5'- -aCC-UGGCCCGcgcGUGGGaGcgggccgugcaGCUGCCCAc -3'
miRNA:   3'- cgGGuACCGGGU---UACCC-C-----------CGACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 14905 0.66 0.613441
Target:  5'- aGgCCAcGGCCCAAcgGGGGuGCUGauguaaCCGc -3'
miRNA:   3'- -CgGGUaCCGGGUUa-CCCC-CGACg-----GGU- -5'
3582 5' -62.4 NC_001650.1 + 48481 0.66 0.613441
Target:  5'- gGCCCuGUGGgCUA--GGGGGCUaGCCg- -3'
miRNA:   3'- -CGGG-UACCgGGUuaCCCCCGA-CGGgu -5'
3582 5' -62.4 NC_001650.1 + 174953 0.66 0.612462
Target:  5'- gGCCUGUGgguauuacucaauGCCCAGUGGGgucucucuGGUUGCCa- -3'
miRNA:   3'- -CGGGUAC-------------CGGGUUACCC--------CCGACGGgu -5'
3582 5' -62.4 NC_001650.1 + 8246 0.66 0.612462
Target:  5'- gGCCUGUGgguauuacucaauGCCCAGUGGGgucucucuGGUUGCCa- -3'
miRNA:   3'- -CGGGUAC-------------CGGGUUACCC--------CCGACGGgu -5'
3582 5' -62.4 NC_001650.1 + 146151 0.67 0.603658
Target:  5'- cGCCCG-GGCCgGGcUGGGgcacaGGgaGCCCGg -3'
miRNA:   3'- -CGGGUaCCGGgUU-ACCC-----CCgaCGGGU- -5'
3582 5' -62.4 NC_001650.1 + 23744 0.67 0.603658
Target:  5'- cGUCCucgcGGCgCGcgGGGGGCggagacccGCCCGa -3'
miRNA:   3'- -CGGGua--CCGgGUuaCCCCCGa-------CGGGU- -5'
3582 5' -62.4 NC_001650.1 + 80661 0.67 0.603658
Target:  5'- cCCCA-GGUCCGagagcgcaauGUGGGGGaugUGUCCAg -3'
miRNA:   3'- cGGGUaCCGGGU----------UACCCCCg--ACGGGU- -5'
3582 5' -62.4 NC_001650.1 + 50032 0.67 0.593895
Target:  5'- gGCCCG-GGCCUGA-GGGGGCUuugGgUCAa -3'
miRNA:   3'- -CGGGUaCCGGGUUaCCCCCGA---CgGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.