Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3583 | 3' | -47.5 | NC_001650.1 | + | 145144 | 0.69 | 0.997974 |
Target: 5'- ----aGAGCCcccgGGGUAACUcccuuUCCCc -3' miRNA: 3'- acauaCUCGGuaa-CCCAUUGAu----AGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 129219 | 0.67 | 0.999687 |
Target: 5'- gGUGgagggGGGUCGagGGGaAGCUGUCCg -3' miRNA: 3'- aCAUa----CUCGGUaaCCCaUUGAUAGGg -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 122458 | 0.67 | 0.999605 |
Target: 5'- gGUGagGAGCUcgUGGGgcAcCUcgCCCc -3' miRNA: 3'- aCAUa-CUCGGuaACCCauU-GAuaGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 111389 | 0.67 | 0.999605 |
Target: 5'- ---cUGAGCCGccUGGGccUGACUGggaCCCg -3' miRNA: 3'- acauACUCGGUa-ACCC--AUUGAUa--GGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 101017 | 0.76 | 0.892131 |
Target: 5'- cUGUGUGcGCCGUccUGGGcGACUAucacaUCCCg -3' miRNA: 3'- -ACAUACuCGGUA--ACCCaUUGAU-----AGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 100005 | 0.74 | 0.949403 |
Target: 5'- -aUGUGAGUCAUUGGaGUcGACUccaaaGUCCCu -3' miRNA: 3'- acAUACUCGGUAACC-CA-UUGA-----UAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 90543 | 0.68 | 0.999328 |
Target: 5'- --cAUGAGCCcg-GGGUAGCggggcugcgugCCCu -3' miRNA: 3'- acaUACUCGGuaaCCCAUUGaua--------GGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 86225 | 0.68 | 0.998606 |
Target: 5'- aGUAUGAGCagcacGGGUAucucgcaggcGCUGUCUa -3' miRNA: 3'- aCAUACUCGguaa-CCCAU----------UGAUAGGg -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 75520 | 0.66 | 0.999851 |
Target: 5'- cGUccGcGGCCGcaggGGGgcGCUGUUCCa -3' miRNA: 3'- aCAuaC-UCGGUaa--CCCauUGAUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 73178 | 0.68 | 0.999237 |
Target: 5'- cGUAcUGGGCCA-UGGGgGACUuGUgCCa -3' miRNA: 3'- aCAU-ACUCGGUaACCCaUUGA-UAgGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 63970 | 0.72 | 0.985581 |
Target: 5'- --gGUGGGCUAUUGGGgggcgagGGCUugcaacgcccuAUCCCu -3' miRNA: 3'- acaUACUCGGUAACCCa------UUGA-----------UAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 53799 | 0.68 | 0.999062 |
Target: 5'- cGgg-GAGCCAaucagaGGcUAGCUGUCCCu -3' miRNA: 3'- aCauaCUCGGUaa----CCcAUUGAUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 47450 | 0.66 | 0.999934 |
Target: 5'- gUGUuuaggGAGCgAggGGGUAGCUgcgaggGUCUCu -3' miRNA: 3'- -ACAua---CUCGgUaaCCCAUUGA------UAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 37713 | 0.67 | 0.999754 |
Target: 5'- cGg--GuGCCcgUGGGccAGCUGUCCUu -3' miRNA: 3'- aCauaCuCGGuaACCCa-UUGAUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 21016 | 0.68 | 0.999003 |
Target: 5'- cUGUGUGAGUUAaaacaUGGGacccauacagcaguUAACUAUCCa -3' miRNA: 3'- -ACAUACUCGGUa----ACCC--------------AUUGAUAGGg -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 20745 | 0.68 | 0.999237 |
Target: 5'- --cAUGGGCCAUuaucacccuUGuGGUGAUUAUCUUg -3' miRNA: 3'- acaUACUCGGUA---------AC-CCAUUGAUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 19430 | 0.66 | 0.999851 |
Target: 5'- aGUAgaccgaGGGCCugcuGUUGGGgugAGCUGUggaCCCa -3' miRNA: 3'- aCAUa-----CUCGG----UAACCCa--UUGAUA---GGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 16772 | 0.69 | 0.998315 |
Target: 5'- gUGgGUGGGCCuaugauguauuaGUUGGGUGGCcAUCUUg -3' miRNA: 3'- -ACaUACUCGG------------UAACCCAUUGaUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 12324 | 0.68 | 0.99883 |
Target: 5'- gGUGUGuGCCAgggggguUUGGGguggGGCcAUCCUc -3' miRNA: 3'- aCAUACuCGGU-------AACCCa---UUGaUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 8517 | 0.71 | 0.990228 |
Target: 5'- gUGUGUGGGUgG-UGGGcuACUGUCCa -3' miRNA: 3'- -ACAUACUCGgUaACCCauUGAUAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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