miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3585 5' -60 NC_001650.1 + 174856 1.11 0.001141
Target:  5'- cACACGGGGGCCCAAUGGGGGAUGUCCa -3'
miRNA:   3'- -UGUGCCCCCGGGUUACCCCCUACAGG- -5'
3585 5' -60 NC_001650.1 + 8149 1.11 0.001141
Target:  5'- cACACGGGGGCCCAAUGGGGGAUGUCCa -3'
miRNA:   3'- -UGUGCCCCCGGGUUACCCCCUACAGG- -5'
3585 5' -60 NC_001650.1 + 173981 0.81 0.139117
Target:  5'- gGCAuUGGGcaauaaagcccauGGCCCAAUGGGGGcUGUCCa -3'
miRNA:   3'- -UGU-GCCC-------------CCGGGUUACCCCCuACAGG- -5'
3585 5' -60 NC_001650.1 + 7274 0.81 0.139117
Target:  5'- gGCAuUGGGcaauaaagcccauGGCCCAAUGGGGGcUGUCCa -3'
miRNA:   3'- -UGU-GCCC-------------CCGGGUUACCCCCuACAGG- -5'
3585 5' -60 NC_001650.1 + 71900 0.8 0.146512
Target:  5'- -gGCGGGGGCCagggacUGGGGGAUGUUg -3'
miRNA:   3'- ugUGCCCCCGGguu---ACCCCCUACAGg -5'
3585 5' -60 NC_001650.1 + 114850 0.79 0.186847
Target:  5'- -aAUGGGGucCCCGA-GGGGGAUGUCCa -3'
miRNA:   3'- ugUGCCCCc-GGGUUaCCCCCUACAGG- -5'
3585 5' -60 NC_001650.1 + 7616 0.76 0.26489
Target:  5'- --uUGGGcaauaaagcccguGGCCCAAUGGGGGcUGUCCc -3'
miRNA:   3'- uguGCCC-------------CCGGGUUACCCCCuACAGG- -5'
3585 5' -60 NC_001650.1 + 174323 0.76 0.26489
Target:  5'- --uUGGGcaauaaagcccguGGCCCAAUGGGGGcUGUCCc -3'
miRNA:   3'- uguGCCC-------------CCGGGUUACCCCCuACAGG- -5'
3585 5' -60 NC_001650.1 + 178672 0.76 0.277804
Target:  5'- uGCAUGGGGGuCCCGGUGGucgcGGuGAgGUCCa -3'
miRNA:   3'- -UGUGCCCCC-GGGUUACC----CC-CUaCAGG- -5'
3585 5' -60 NC_001650.1 + 11965 0.76 0.277804
Target:  5'- uGCAUGGGGGuCCCGGUGGucgcGGuGAgGUCCa -3'
miRNA:   3'- -UGUGCCCCC-GGGUUACC----CC-CUaCAGG- -5'
3585 5' -60 NC_001650.1 + 174970 0.76 0.290565
Target:  5'- -gGCGGGGG-CCAAUGGGGGGccUGUg- -3'
miRNA:   3'- ugUGCCCCCgGGUUACCCCCU--ACAgg -5'
3585 5' -60 NC_001650.1 + 8263 0.76 0.290565
Target:  5'- -gGCGGGGG-CCAAUGGGGGGccUGUg- -3'
miRNA:   3'- ugUGCCCCCgGGUUACCCCCU--ACAgg -5'
3585 5' -60 NC_001650.1 + 175535 0.75 0.317455
Target:  5'- cUAUGGGGGUCUggUGGGuguGGggGUCCu -3'
miRNA:   3'- uGUGCCCCCGGGuuACCC---CCuaCAGG- -5'
3585 5' -60 NC_001650.1 + 8828 0.75 0.317455
Target:  5'- cUAUGGGGGUCUggUGGGuguGGggGUCCu -3'
miRNA:   3'- uGUGCCCCCGGGuuACCC---CCuaCAGG- -5'
3585 5' -60 NC_001650.1 + 134541 0.75 0.331586
Target:  5'- gACACGGaGGGCCCc--GGGGGgcG-CCg -3'
miRNA:   3'- -UGUGCC-CCCGGGuuaCCCCCuaCaGG- -5'
3585 5' -60 NC_001650.1 + 12500 0.74 0.338823
Target:  5'- uACAUGGGGGUCCcugggaGGGaGGAUGcCCa -3'
miRNA:   3'- -UGUGCCCCCGGGuua---CCC-CCUACaGG- -5'
3585 5' -60 NC_001650.1 + 179207 0.74 0.338823
Target:  5'- uACAUGGGGGUCCcugggaGGGaGGAUGcCCa -3'
miRNA:   3'- -UGUGCCCCCGGGuua---CCC-CCUACaGG- -5'
3585 5' -60 NC_001650.1 + 174093 0.74 0.368134
Target:  5'- gGCAuUGGGcaauaaagcccauGGCCCAAUGGGGacUGUCCa -3'
miRNA:   3'- -UGU-GCCC-------------CCGGGUUACCCCcuACAGG- -5'
3585 5' -60 NC_001650.1 + 173391 0.74 0.368134
Target:  5'- gGCAuUGGGcaauaaagcccauGGCCCAAUGGGGGcUGcCCa -3'
miRNA:   3'- -UGU-GCCC-------------CCGGGUUACCCCCuACaGG- -5'
3585 5' -60 NC_001650.1 + 7386 0.74 0.368134
Target:  5'- gGCAuUGGGcaauaaagcccauGGCCCAAUGGGGacUGUCCa -3'
miRNA:   3'- -UGU-GCCC-------------CCGGGUUACCCCcuACAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.