miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3585 5' -60 NC_001650.1 + 46 0.66 0.817348
Target:  5'- aACACGGGGGgCCAcaaaGGGcgG-CCg -3'
miRNA:   3'- -UGUGCCCCCgGGUuaccCCCuaCaGG- -5'
3585 5' -60 NC_001650.1 + 298 0.72 0.442979
Target:  5'- gUugGGaGGGCCCcgagGGGGGGUuUCCc -3'
miRNA:   3'- uGugCC-CCCGGGuua-CCCCCUAcAGG- -5'
3585 5' -60 NC_001650.1 + 823 0.73 0.409008
Target:  5'- -aAUGGGGGCCCGggGGaGGGcgGcagCCg -3'
miRNA:   3'- ugUGCCCCCGGGUuaCC-CCCuaCa--GG- -5'
3585 5' -60 NC_001650.1 + 896 0.72 0.460551
Target:  5'- -aAUGGGcGGCCCGAggugggguuUGGGGGAgugagGUCa -3'
miRNA:   3'- ugUGCCC-CCGGGUU---------ACCCCCUa----CAGg -5'
3585 5' -60 NC_001650.1 + 1281 0.7 0.582273
Target:  5'- -aAUGGGGGCCC----GGGGGUGggcCCa -3'
miRNA:   3'- ugUGCCCCCGGGuuacCCCCUACa--GG- -5'
3585 5' -60 NC_001650.1 + 1466 0.71 0.524727
Target:  5'- -aAUGGGGGCCCg--GGGGGcgGg-- -3'
miRNA:   3'- ugUGCCCCCGGGuuaCCCCCuaCagg -5'
3585 5' -60 NC_001650.1 + 1769 0.68 0.689783
Target:  5'- cCAUGGaGGCCCuGUGGGaGGUGcCCa -3'
miRNA:   3'- uGUGCCcCCGGGuUACCCcCUACaGG- -5'
3585 5' -60 NC_001650.1 + 2906 0.66 0.783067
Target:  5'- cCACccuauuGGCCCAG-GGGGGcUGUCCa -3'
miRNA:   3'- uGUGccc---CCGGGUUaCCCCCuACAGG- -5'
3585 5' -60 NC_001650.1 + 4213 0.67 0.765149
Target:  5'- uCAUGGGGGgUC-AUGGGGGGUcuuagguaaugGUCa -3'
miRNA:   3'- uGUGCCCCCgGGuUACCCCCUA-----------CAGg -5'
3585 5' -60 NC_001650.1 + 5046 0.68 0.70809
Target:  5'- -gACGGGGGUCCcuccgggGGUGGGGGcuucGUUa -3'
miRNA:   3'- ugUGCCCCCGGG-------UUACCCCCua--CAGg -5'
3585 5' -60 NC_001650.1 + 5846 0.69 0.650784
Target:  5'- --cCGGGGGUCUAA-GGGGGccGcCCa -3'
miRNA:   3'- uguGCCCCCGGGUUaCCCCCuaCaGG- -5'
3585 5' -60 NC_001650.1 + 6036 0.69 0.621365
Target:  5'- -aAUGGGGGCCUA--GGGGGccUGcCCa -3'
miRNA:   3'- ugUGCCCCCGGGUuaCCCCCu-ACaGG- -5'
3585 5' -60 NC_001650.1 + 6684 0.74 0.368134
Target:  5'- gGCAuUGGGcaauaaagcccauGGCCCAAUGGGGGcUGcCCa -3'
miRNA:   3'- -UGU-GCCC-------------CCGGGUUACCCCCuACaGG- -5'
3585 5' -60 NC_001650.1 + 6918 0.66 0.808147
Target:  5'- gGCAuUGGGcaauaaagcccuuGGCCCAAUGGGGGccGa-- -3'
miRNA:   3'- -UGU-GCCC-------------CCGGGUUACCCCCuaCagg -5'
3585 5' -60 NC_001650.1 + 7007 0.68 0.70809
Target:  5'- --uUGGGuaacuaucccaguGGCCCAAUGGGGGAUa--- -3'
miRNA:   3'- uguGCCC-------------CCGGGUUACCCCCUAcagg -5'
3585 5' -60 NC_001650.1 + 7052 0.68 0.683966
Target:  5'- gGCAUGGGgcaauaaagcccccuGGCCCAAUGGGuGGcagGggCCu -3'
miRNA:   3'- -UGUGCCC---------------CCGGGUUACCC-CCua-Ca-GG- -5'
3585 5' -60 NC_001650.1 + 7274 0.81 0.139117
Target:  5'- gGCAuUGGGcaauaaagcccauGGCCCAAUGGGGGcUGUCCa -3'
miRNA:   3'- -UGU-GCCC-------------CCGGGUUACCCCCuACAGG- -5'
3585 5' -60 NC_001650.1 + 7386 0.74 0.368134
Target:  5'- gGCAuUGGGcaauaaagcccauGGCCCAAUGGGGacUGUCCa -3'
miRNA:   3'- -UGU-GCCC-------------CCGGGUUACCCCcuACAGG- -5'
3585 5' -60 NC_001650.1 + 7480 0.69 0.631173
Target:  5'- --cCGGcGGCCCAAUGGGGGcuacCCa -3'
miRNA:   3'- uguGCCcCCGGGUUACCCCCuacaGG- -5'
3585 5' -60 NC_001650.1 + 7616 0.76 0.26489
Target:  5'- --uUGGGcaauaaagcccguGGCCCAAUGGGGGcUGUCCc -3'
miRNA:   3'- uguGCCC-------------CCGGGUUACCCCCuACAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.