miRNA display CGI


Results 1 - 20 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3585 5' -60 NC_001650.1 + 129561 0.67 0.737478
Target:  5'- -gGCGGGGGCUgCAGUGcuGGGGcagGaUCCa -3'
miRNA:   3'- ugUGCCCCCGG-GUUAC--CCCCua-C-AGG- -5'
3585 5' -60 NC_001650.1 + 41614 0.68 0.68008
Target:  5'- ----cGGGGCCCGGuUGGuGGGuguguGUGUCCa -3'
miRNA:   3'- ugugcCCCCGGGUU-ACC-CCC-----UACAGG- -5'
3585 5' -60 NC_001650.1 + 77039 0.68 0.689783
Target:  5'- cCGCGcuGGGCCUc--GGGGGAgcccgUGUCCa -3'
miRNA:   3'- uGUGCc-CCCGGGuuaCCCCCU-----ACAGG- -5'
3585 5' -60 NC_001650.1 + 1769 0.68 0.689783
Target:  5'- cCAUGGaGGCCCuGUGGGaGGUGcCCa -3'
miRNA:   3'- uGUGCCcCCGGGuUACCCcCUACaGG- -5'
3585 5' -60 NC_001650.1 + 168476 0.68 0.689783
Target:  5'- cCAUGGaGGCCCuGUGGGaGGUGcCCa -3'
miRNA:   3'- uGUGCCcCCGGGuUACCCcCUACaGG- -5'
3585 5' -60 NC_001650.1 + 5046 0.68 0.70809
Target:  5'- -gACGGGGGUCCcuccgggGGUGGGGGcuucGUUa -3'
miRNA:   3'- ugUGCCCCCGGG-------UUACCCCCua--CAGg -5'
3585 5' -60 NC_001650.1 + 171753 0.68 0.70809
Target:  5'- -gACGGGGGUCCcuccgggGGUGGGGGcuucGUUa -3'
miRNA:   3'- ugUGCCCCCGGG-------UUACCCCCua--CAGg -5'
3585 5' -60 NC_001650.1 + 37637 0.67 0.728075
Target:  5'- cGCGCGGGGGCCCcccgucGGGu--UCCu -3'
miRNA:   3'- -UGUGCCCCCGGGuuacc-CCCuacAGG- -5'
3585 5' -60 NC_001650.1 + 128807 0.67 0.728075
Target:  5'- aACGCcGGGGCCCucaucGGGGAgagCCa -3'
miRNA:   3'- -UGUGcCCCCGGGuuac-CCCCUacaGG- -5'
3585 5' -60 NC_001650.1 + 91032 0.68 0.660573
Target:  5'- uACAgGGGGGUgaCCGucuUGGGGGcgGUg- -3'
miRNA:   3'- -UGUgCCCCCG--GGUu--ACCCCCuaCAgg -5'
3585 5' -60 NC_001650.1 + 88305 0.69 0.650784
Target:  5'- cCugGaGGGGCgCGGcGGGGaGGUGUUCg -3'
miRNA:   3'- uGugC-CCCCGgGUUaCCCC-CUACAGG- -5'
3585 5' -60 NC_001650.1 + 119529 0.69 0.649804
Target:  5'- cACcCGGGGuuucaccgggucGCCCGAgGGGGGGUaggggcaggucucGUCCa -3'
miRNA:   3'- -UGuGCCCC------------CGGGUUaCCCCCUA-------------CAGG- -5'
3585 5' -60 NC_001650.1 + 52564 0.71 0.515333
Target:  5'- -gGCGGGGGCguUCGAgucGGGGGGUcGUCg -3'
miRNA:   3'- ugUGCCCCCG--GGUUa--CCCCCUA-CAGg -5'
3585 5' -60 NC_001650.1 + 23755 0.7 0.560972
Target:  5'- cGCGCGGGGggcggagacccGCCCGA-GGGGGGcgcugacaucaaGUCCu -3'
miRNA:   3'- -UGUGCCCC-----------CGGGUUaCCCCCUa-----------CAGG- -5'
3585 5' -60 NC_001650.1 + 89095 0.7 0.561936
Target:  5'- uCGCGGGGgacgaccGCCCAccGGGGGGcaUCCu -3'
miRNA:   3'- uGUGCCCC-------CGGGUuaCCCCCUacAGG- -5'
3585 5' -60 NC_001650.1 + 123945 0.7 0.572567
Target:  5'- cUACGuGGGGCCCAcgGGGGuGGaGUa- -3'
miRNA:   3'- uGUGC-CCCCGGGUuaCCCC-CUaCAgg -5'
3585 5' -60 NC_001650.1 + 126480 0.69 0.611564
Target:  5'- -gACGGGGGUCCGucgaggacGGGGAgggGUCUu -3'
miRNA:   3'- ugUGCCCCCGGGUuac-----CCCCUa--CAGG- -5'
3585 5' -60 NC_001650.1 + 126761 0.69 0.611564
Target:  5'- -gGCGaGGGGCCCGggggaAUGGGGGGg---- -3'
miRNA:   3'- ugUGC-CCCCGGGU-----UACCCCCUacagg -5'
3585 5' -60 NC_001650.1 + 163176 0.69 0.611564
Target:  5'- -aGCGGGGGCaUCGGUGGcGG-UGUCUa -3'
miRNA:   3'- ugUGCCCCCG-GGUUACCcCCuACAGG- -5'
3585 5' -60 NC_001650.1 + 126614 0.69 0.621365
Target:  5'- cGCAgGGGGGgCgaagagggCGGUGGcgaggacgauGGGAUGUCCg -3'
miRNA:   3'- -UGUgCCCCCgG--------GUUACC----------CCCUACAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.