miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3586 3' -58.7 NC_001650.1 + 9118 1.07 0.002376
Target:  5'- cUCCCCCGUGGCUGGGCAAGAGAGAUAa -3'
miRNA:   3'- -AGGGGGCACCGACCCGUUCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 175825 1.07 0.002376
Target:  5'- cUCCCCCGUGGCUGGGCAAGAGAGAUAa -3'
miRNA:   3'- -AGGGGGCACCGACCCGUUCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 57951 0.74 0.346591
Target:  5'- cUCCCCCGUcgcccaccccgcgaGGCcGGGCAAGAG-GAa- -3'
miRNA:   3'- -AGGGGGCA--------------CCGaCCCGUUCUCuCUau -5'
3586 3' -58.7 NC_001650.1 + 88840 0.74 0.372327
Target:  5'- cUCCCCCGUcGCcgccgGGGCAGGAGuAGAc- -3'
miRNA:   3'- -AGGGGGCAcCGa----CCCGUUCUC-UCUau -5'
3586 3' -58.7 NC_001650.1 + 117143 0.73 0.396826
Target:  5'- gCCCCCGUGGUacuuuaggagGGGCAcgucAGAGGGGg- -3'
miRNA:   3'- aGGGGGCACCGa---------CCCGU----UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 83551 0.73 0.422339
Target:  5'- -gCCCCGUuucaggcuGGCccUGGGCAAGGGGGAg- -3'
miRNA:   3'- agGGGGCA--------CCG--ACCCGUUCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 27861 0.73 0.43106
Target:  5'- cCCCCCGUGGUggccucGGuCAGGAGGGAc- -3'
miRNA:   3'- aGGGGGCACCGac----CC-GUUCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 174141 0.72 0.448813
Target:  5'- aCCCCgGUuGCUGGGCAgacuaAGGGGGAa- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 7434 0.72 0.448813
Target:  5'- aCCCCgGUuGCUGGGCAgacuaAGGGGGAa- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 108551 0.72 0.457839
Target:  5'- cUCCCgCCGcGGCUGGGgGAGgAGGGGg- -3'
miRNA:   3'- -AGGG-GGCaCCGACCCgUUC-UCUCUau -5'
3586 3' -58.7 NC_001650.1 + 29784 0.71 0.504347
Target:  5'- cUCgUCCGUGGCUGGGaaaAAGAG-GAa- -3'
miRNA:   3'- -AGgGGGCACCGACCCg--UUCUCuCUau -5'
3586 3' -58.7 NC_001650.1 + 84917 0.7 0.562645
Target:  5'- aCgCCgGUaaGGCUagGGGCGAGGGAGAUGg -3'
miRNA:   3'- aGgGGgCA--CCGA--CCCGUUCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 118034 0.7 0.581513
Target:  5'- gCCCgCGUgccugagGGCgagGGGCGAGGGGGAg- -3'
miRNA:   3'- aGGGgGCA-------CCGa--CCCGUUCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 60762 0.7 0.61255
Target:  5'- cUCCCCGUagGuGCUGGGCAGGGGcgcGGGg- -3'
miRNA:   3'- aGGGGGCA--C-CGACCCGUUCUC---UCUau -5'
3586 3' -58.7 NC_001650.1 + 163404 0.69 0.6226
Target:  5'- aCCCCCGUGGCUGa--AAGGGuAGAc- -3'
miRNA:   3'- aGGGGGCACCGACccgUUCUC-UCUau -5'
3586 3' -58.7 NC_001650.1 + 121852 0.69 0.631652
Target:  5'- gUCCUCGgggGGcCUGGGCAGGAagauccuGAGGUAg -3'
miRNA:   3'- aGGGGGCa--CC-GACCCGUUCU-------CUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 173807 0.69 0.632658
Target:  5'- aCCCUgGUuGCUGGGCAgacuaAGGGGGAa- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 56154 0.69 0.632658
Target:  5'- gCCCCUGUGGUUGG-CAcccgggugaucAGAGAGGc- -3'
miRNA:   3'- aGGGGGCACCGACCcGU-----------UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 7100 0.69 0.632658
Target:  5'- aCCCUgGUuGCUGGGCAgacuaAGGGGGAa- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 145668 0.69 0.642716
Target:  5'- gUCCCCCGaGcGCUGguacagcuGGCAGGAGAGc-- -3'
miRNA:   3'- -AGGGGGCaC-CGAC--------CCGUUCUCUCuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.