miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3586 3' -58.7 NC_001650.1 + 1831 0.66 0.796902
Target:  5'- aUCCCCUcucGGCcaaugGGGguAGGGGGGUGg -3'
miRNA:   3'- -AGGGGGca-CCGa----CCCguUCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 2174 0.66 0.822776
Target:  5'- cUCCCCauUGGCuaaaUGGGuCAGuGGGAGGUAc -3'
miRNA:   3'- -AGGGGgcACCG----ACCC-GUU-CUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 2536 0.68 0.703597
Target:  5'- aUCCCCaUGUGGCcaacggggagucaggGGGCAGGguuauGGGGAUGa -3'
miRNA:   3'- -AGGGG-GCACCGa--------------CCCGUUC-----UCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 6112 0.67 0.731897
Target:  5'- gCCCUgGUuGCUGGGCAGacuGAGGGGg- -3'
miRNA:   3'- aGGGGgCAcCGACCCGUU---CUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 6732 0.69 0.642716
Target:  5'- gCCCUgGUuGCUGGGCAgacuaaGGGGAGAc- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU------UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 6854 0.66 0.831076
Target:  5'- gCCCUgGUuGCUGGGCAGacuguGGGGGAc- -3'
miRNA:   3'- aGGGGgCAcCGACCCGUU-----CUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 7100 0.69 0.632658
Target:  5'- aCCCUgGUuGCUGGGCAgacuaAGGGGGAa- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 7434 0.72 0.448813
Target:  5'- aCCCCgGUuGCUGGGCAgacuaAGGGGGAa- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 8001 0.66 0.814308
Target:  5'- aCCCCC-UGGuCUGccuGGCAaccAGAGAGAc- -3'
miRNA:   3'- aGGGGGcACC-GAC---CCGU---UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 8164 0.67 0.767884
Target:  5'- -gCCCCGUGGUgauuacacacggGGGCccaauGGGGGAUGu -3'
miRNA:   3'- agGGGGCACCGa-----------CCCGuu---CUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 8544 0.66 0.805681
Target:  5'- aCCCCCGgGGUgguggGGGCuauGGGGGUGu -3'
miRNA:   3'- aGGGGGCaCCGa----CCCGuucUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 9118 1.07 0.002376
Target:  5'- cUCCCCCGUGGCUGGGCAAGAGAGAUAa -3'
miRNA:   3'- -AGGGGGCACCGACCCGUUCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 18522 0.67 0.760432
Target:  5'- gUUCCCCG-GGgaGaGGgGGGAGAGAa- -3'
miRNA:   3'- -AGGGGGCaCCgaC-CCgUUCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 26511 0.67 0.756679
Target:  5'- gUUCCCCGUGGaggaggcgucccucCUGGGCAaccuccacgcgggGGGcGAGGUGu -3'
miRNA:   3'- -AGGGGGCACC--------------GACCCGU-------------UCU-CUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 27861 0.73 0.43106
Target:  5'- cCCCCCGUGGUggccucGGuCAGGAGGGAc- -3'
miRNA:   3'- aGGGGGCACCGac----CC-GUUCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 29784 0.71 0.504347
Target:  5'- cUCgUCCGUGGCUGGGaaaAAGAG-GAa- -3'
miRNA:   3'- -AGgGGGCACCGACCCg--UUCUCuCUau -5'
3586 3' -58.7 NC_001650.1 + 36658 0.68 0.682786
Target:  5'- uUCUCCugccugcuggaCGUGGCcGGGCGGGAGGGcUAc -3'
miRNA:   3'- -AGGGG-----------GCACCGaCCCGUUCUCUCuAU- -5'
3586 3' -58.7 NC_001650.1 + 50549 0.67 0.751019
Target:  5'- gUCCCCGgGGCUcgaggaggccgGGGCcGGGAGGGAc- -3'
miRNA:   3'- aGGGGGCaCCGA-----------CCCG-UUCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 50856 0.68 0.72318
Target:  5'- cCCCCCGcgGGCaccggccccucgaggGGGCGcaucAGGGAGAUc -3'
miRNA:   3'- aGGGGGCa-CCGa--------------CCCGU----UCUCUCUAu -5'
3586 3' -58.7 NC_001650.1 + 56154 0.69 0.632658
Target:  5'- gCCCCUGUGGUUGG-CAcccgggugaucAGAGAGGc- -3'
miRNA:   3'- aGGGGGCACCGACCcGU-----------UCUCUCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.