miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3586 3' -58.7 NC_001650.1 + 175825 1.07 0.002376
Target:  5'- cUCCCCCGUGGCUGGGCAAGAGAGAUAa -3'
miRNA:   3'- -AGGGGGCACCGACCCGUUCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 175251 0.66 0.805681
Target:  5'- aCCCCCGgGGUgguggGGGCuauGGGGGUGu -3'
miRNA:   3'- aGGGGGCaCCGa----CCCGuucUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 174871 0.67 0.767884
Target:  5'- -gCCCCGUGGUgauuacacacggGGGCccaauGGGGGAUGu -3'
miRNA:   3'- agGGGGCACCGa-----------CCCGuu---CUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 174708 0.66 0.814308
Target:  5'- aCCCCC-UGGuCUGccuGGCAaccAGAGAGAc- -3'
miRNA:   3'- aGGGGGcACC-GAC---CCGU---UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 174141 0.72 0.448813
Target:  5'- aCCCCgGUuGCUGGGCAgacuaAGGGGGAa- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 173807 0.69 0.632658
Target:  5'- aCCCUgGUuGCUGGGCAgacuaAGGGGGAa- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 173561 0.66 0.831076
Target:  5'- gCCCUgGUuGCUGGGCAGacuguGGGGGAc- -3'
miRNA:   3'- aGGGGgCAcCGACCCGUU-----CUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 173439 0.69 0.642716
Target:  5'- gCCCUgGUuGCUGGGCAgacuaaGGGGAGAc- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU------UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 172819 0.67 0.731897
Target:  5'- gCCCUgGUuGCUGGGCAGacuGAGGGGg- -3'
miRNA:   3'- aGGGGgCAcCGACCCGUU---CUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 169243 0.68 0.703597
Target:  5'- aUCCCCaUGUGGCcaacggggagucaggGGGCAGGguuauGGGGAUGa -3'
miRNA:   3'- -AGGGG-GCACCGa--------------CCCGUUC-----UCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 168881 0.66 0.822776
Target:  5'- cUCCCCauUGGCuaaaUGGGuCAGuGGGAGGUAc -3'
miRNA:   3'- -AGGGGgcACCG----ACCC-GUU-CUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 168538 0.66 0.796902
Target:  5'- aUCCCCUcucGGCcaaugGGGguAGGGGGGUGg -3'
miRNA:   3'- -AGGGGGca-CCGa----CCCguUCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 164445 0.67 0.731897
Target:  5'- aCCCCCGgcucacccgGGagGGGCu-GAGAGAUAu -3'
miRNA:   3'- aGGGGGCa--------CCgaCCCGuuCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 163404 0.69 0.6226
Target:  5'- aCCCCCGUGGCUGa--AAGGGuAGAc- -3'
miRNA:   3'- aGGGGGCACCGACccgUUCUC-UCUau -5'
3586 3' -58.7 NC_001650.1 + 162856 0.67 0.778921
Target:  5'- uUUCUCCGccauuGCUGGGCuuGGAGGGGUGc -3'
miRNA:   3'- -AGGGGGCac---CGACCCGu-UCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 155994 0.68 0.682786
Target:  5'- gUCCCCCG-GGCggcGGGUggGGGcGGc- -3'
miRNA:   3'- -AGGGGGCaCCGa--CCCGuuCUCuCUau -5'
3586 3' -58.7 NC_001650.1 + 155642 0.67 0.769736
Target:  5'- gCCgCCGgagggGGCggggaggGGGgAGGAGAGGUGg -3'
miRNA:   3'- aGGgGGCa----CCGa------CCCgUUCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 146153 0.66 0.822776
Target:  5'- cUCgCCCGggccgGGCUgGGGCAcAGGGAGc-- -3'
miRNA:   3'- -AGgGGGCa----CCGA-CCCGU-UCUCUCuau -5'
3586 3' -58.7 NC_001650.1 + 145668 0.69 0.642716
Target:  5'- gUCCCCCGaGcGCUGguacagcuGGCAGGAGAGc-- -3'
miRNA:   3'- -AGGGGGCaC-CGAC--------CCGUUCUCUCuau -5'
3586 3' -58.7 NC_001650.1 + 142390 0.68 0.712442
Target:  5'- cUUCCCCGgGGCggUGGGaGAGGGGGGUc -3'
miRNA:   3'- -AGGGGGCaCCG--ACCCgUUCUCUCUAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.