miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3586 3' -58.7 NC_001650.1 + 174708 0.66 0.814308
Target:  5'- aCCCCC-UGGuCUGccuGGCAaccAGAGAGAc- -3'
miRNA:   3'- aGGGGGcACC-GAC---CCGU---UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 76686 0.67 0.731897
Target:  5'- aCCCCCGUGGCcuugucggcgUGGuGCAGGAacuugaccggcaGGGGg- -3'
miRNA:   3'- aGGGGGCACCG----------ACC-CGUUCU------------CUCUau -5'
3586 3' -58.7 NC_001650.1 + 26511 0.67 0.756679
Target:  5'- gUUCCCCGUGGaggaggcgucccucCUGGGCAaccuccacgcgggGGGcGAGGUGu -3'
miRNA:   3'- -AGGGGGCACC--------------GACCCGU-------------UCU-CUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 18522 0.67 0.760432
Target:  5'- gUUCCCCG-GGgaGaGGgGGGAGAGAa- -3'
miRNA:   3'- -AGGGGGCaCCgaC-CCgUUCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 88488 0.67 0.760432
Target:  5'- cUCCUCCG-GGCgGGGCGGGgacgccgggcgGGAGGa- -3'
miRNA:   3'- -AGGGGGCaCCGaCCCGUUC-----------UCUCUau -5'
3586 3' -58.7 NC_001650.1 + 77704 0.67 0.769736
Target:  5'- gCCUCUGUauaGGCgGGGCcuuuucuguagaGAGAGGGAUAg -3'
miRNA:   3'- aGGGGGCA---CCGaCCCG------------UUCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 75087 0.67 0.778921
Target:  5'- -aCCCCG-GGagcGGaGCGAGAGAGAa- -3'
miRNA:   3'- agGGGGCaCCga-CC-CGUUCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 132446 0.66 0.805681
Target:  5'- gCCgCC-UGGCUGGGgGAGAG-GAa- -3'
miRNA:   3'- aGGgGGcACCGACCCgUUCUCuCUau -5'
3586 3' -58.7 NC_001650.1 + 8001 0.66 0.814308
Target:  5'- aCCCCC-UGGuCUGccuGGCAaccAGAGAGAc- -3'
miRNA:   3'- aGGGGGcACC-GAC---CCGU---UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 164445 0.67 0.731897
Target:  5'- aCCCCCGgcucacccgGGagGGGCu-GAGAGAUAu -3'
miRNA:   3'- aGGGGGCa--------CCgaCCCGuuCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 142390 0.68 0.712442
Target:  5'- cUUCCCCGgGGCggUGGGaGAGGGGGGUc -3'
miRNA:   3'- -AGGGGGCaCCG--ACCCgUUCUCUCUAu -5'
3586 3' -58.7 NC_001650.1 + 36658 0.68 0.682786
Target:  5'- uUCUCCugccugcuggaCGUGGCcGGGCGGGAGGGcUAc -3'
miRNA:   3'- -AGGGG-----------GCACCGaCCCGUUCUCUCuAU- -5'
3586 3' -58.7 NC_001650.1 + 83551 0.73 0.422339
Target:  5'- -gCCCCGUuucaggcuGGCccUGGGCAAGGGGGAg- -3'
miRNA:   3'- agGGGGCA--------CCG--ACCCGUUCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 27861 0.73 0.43106
Target:  5'- cCCCCCGUGGUggccucGGuCAGGAGGGAc- -3'
miRNA:   3'- aGGGGGCACCGac----CC-GUUCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 108551 0.72 0.457839
Target:  5'- cUCCCgCCGcGGCUGGGgGAGgAGGGGg- -3'
miRNA:   3'- -AGGG-GGCaCCGACCCgUUC-UCUCUau -5'
3586 3' -58.7 NC_001650.1 + 29784 0.71 0.504347
Target:  5'- cUCgUCCGUGGCUGGGaaaAAGAG-GAa- -3'
miRNA:   3'- -AGgGGGCACCGACCCg--UUCUCuCUau -5'
3586 3' -58.7 NC_001650.1 + 84917 0.7 0.562645
Target:  5'- aCgCCgGUaaGGCUagGGGCGAGGGAGAUGg -3'
miRNA:   3'- aGgGGgCA--CCGA--CCCGUUCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 60762 0.7 0.61255
Target:  5'- cUCCCCGUagGuGCUGGGCAGGGGcgcGGGg- -3'
miRNA:   3'- aGGGGGCA--C-CGACCCGUUCUC---UCUau -5'
3586 3' -58.7 NC_001650.1 + 56154 0.69 0.632658
Target:  5'- gCCCCUGUGGUUGG-CAcccgggugaucAGAGAGGc- -3'
miRNA:   3'- aGGGGGCACCGACCcGU-----------UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 145668 0.69 0.642716
Target:  5'- gUCCCCCGaGcGCUGguacagcuGGCAGGAGAGc-- -3'
miRNA:   3'- -AGGGGGCaC-CGAC--------CCGUUCUCUCuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.