miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3586 3' -58.7 NC_001650.1 + 60762 0.7 0.61255
Target:  5'- cUCCCCGUagGuGCUGGGCAGGGGcgcGGGg- -3'
miRNA:   3'- aGGGGGCA--C-CGACCCGUUCUC---UCUau -5'
3586 3' -58.7 NC_001650.1 + 56154 0.69 0.632658
Target:  5'- gCCCCUGUGGUUGG-CAcccgggugaucAGAGAGGc- -3'
miRNA:   3'- aGGGGGCACCGACCcGU-----------UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 145668 0.69 0.642716
Target:  5'- gUCCCCCGaGcGCUGguacagcuGGCAGGAGAGc-- -3'
miRNA:   3'- -AGGGGGCaC-CGAC--------CCGUUCUCUCuau -5'
3586 3' -58.7 NC_001650.1 + 36658 0.68 0.682786
Target:  5'- uUCUCCugccugcuggaCGUGGCcGGGCGGGAGGGcUAc -3'
miRNA:   3'- -AGGGG-----------GCACCGaCCCGUUCUCUCuAU- -5'
3586 3' -58.7 NC_001650.1 + 142390 0.68 0.712442
Target:  5'- cUUCCCCGgGGCggUGGGaGAGGGGGGUc -3'
miRNA:   3'- -AGGGGGCaCCG--ACCCgUUCUCUCUAu -5'
3586 3' -58.7 NC_001650.1 + 164445 0.67 0.731897
Target:  5'- aCCCCCGgcucacccgGGagGGGCu-GAGAGAUAu -3'
miRNA:   3'- aGGGGGCa--------CCgaCCCGuuCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 121852 0.69 0.631652
Target:  5'- gUCCUCGgggGGcCUGGGCAGGAagauccuGAGGUAg -3'
miRNA:   3'- aGGGGGCa--CC-GACCCGUUCU-------CUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 173807 0.69 0.632658
Target:  5'- aCCCUgGUuGCUGGGCAgacuaAGGGGGAa- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 7100 0.69 0.632658
Target:  5'- aCCCUgGUuGCUGGGCAgacuaAGGGGGAa- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 173439 0.69 0.642716
Target:  5'- gCCCUgGUuGCUGGGCAgacuaaGGGGAGAc- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU------UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 6732 0.69 0.642716
Target:  5'- gCCCUgGUuGCUGGGCAgacuaaGGGGAGAc- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU------UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 111718 0.69 0.652765
Target:  5'- cUCCCCCGUGcGCgcgGcGGCGGGgaucaccagcccGGGGGUGg -3'
miRNA:   3'- -AGGGGGCAC-CGa--C-CCGUUC------------UCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 163404 0.69 0.6226
Target:  5'- aCCCCCGUGGCUGa--AAGGGuAGAc- -3'
miRNA:   3'- aGGGGGCACCGACccgUUCUC-UCUau -5'
3586 3' -58.7 NC_001650.1 + 118034 0.7 0.581513
Target:  5'- gCCCgCGUgccugagGGCgagGGGCGAGGGGGAg- -3'
miRNA:   3'- aGGGgGCA-------CCGa--CCCGUUCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 7434 0.72 0.448813
Target:  5'- aCCCCgGUuGCUGGGCAgacuaAGGGGGAa- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 174141 0.72 0.448813
Target:  5'- aCCCCgGUuGCUGGGCAgacuaAGGGGGAa- -3'
miRNA:   3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 88840 0.74 0.372327
Target:  5'- cUCCCCCGUcGCcgccgGGGCAGGAGuAGAc- -3'
miRNA:   3'- -AGGGGGCAcCGa----CCCGUUCUC-UCUau -5'
3586 3' -58.7 NC_001650.1 + 57951 0.74 0.346591
Target:  5'- cUCCCCCGUcgcccaccccgcgaGGCcGGGCAAGAG-GAa- -3'
miRNA:   3'- -AGGGGGCA--------------CCGaCCCGUUCUCuCUau -5'
3586 3' -58.7 NC_001650.1 + 9118 1.07 0.002376
Target:  5'- cUCCCCCGUGGCUGGGCAAGAGAGAUAa -3'
miRNA:   3'- -AGGGGGCACCGACCCGUUCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 6854 0.66 0.831076
Target:  5'- gCCCUgGUuGCUGGGCAGacuguGGGGGAc- -3'
miRNA:   3'- aGGGGgCAcCGACCCGUU-----CUCUCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.