Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 57951 | 0.74 | 0.346591 |
Target: 5'- cUCCCCCGUcgcccaccccgcgaGGCcGGGCAAGAG-GAa- -3' miRNA: 3'- -AGGGGGCA--------------CCGaCCCGUUCUCuCUau -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 59285 | 0.66 | 0.814308 |
Target: 5'- cCCCCCGagauauggaGGCUGGuguacgacggcuGCAAG-GAGAUGg -3' miRNA: 3'- aGGGGGCa--------CCGACC------------CGUUCuCUCUAU- -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 60762 | 0.7 | 0.61255 |
Target: 5'- cUCCCCGUagGuGCUGGGCAGGGGcgcGGGg- -3' miRNA: 3'- aGGGGGCA--C-CGACCCGUUCUC---UCUau -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 75087 | 0.67 | 0.778921 |
Target: 5'- -aCCCCG-GGagcGGaGCGAGAGAGAa- -3' miRNA: 3'- agGGGGCaCCga-CC-CGUUCUCUCUau -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 76686 | 0.67 | 0.731897 |
Target: 5'- aCCCCCGUGGCcuugucggcgUGGuGCAGGAacuugaccggcaGGGGg- -3' miRNA: 3'- aGGGGGCACCG----------ACC-CGUUCU------------CUCUau -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 77704 | 0.67 | 0.769736 |
Target: 5'- gCCUCUGUauaGGCgGGGCcuuuucuguagaGAGAGGGAUAg -3' miRNA: 3'- aGGGGGCA---CCGaCCCG------------UUCUCUCUAU- -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 83551 | 0.73 | 0.422339 |
Target: 5'- -gCCCCGUuucaggcuGGCccUGGGCAAGGGGGAg- -3' miRNA: 3'- agGGGGCA--------CCG--ACCCGUUCUCUCUau -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 84917 | 0.7 | 0.562645 |
Target: 5'- aCgCCgGUaaGGCUagGGGCGAGGGAGAUGg -3' miRNA: 3'- aGgGGgCA--CCGA--CCCGUUCUCUCUAU- -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 88488 | 0.67 | 0.760432 |
Target: 5'- cUCCUCCG-GGCgGGGCGGGgacgccgggcgGGAGGa- -3' miRNA: 3'- -AGGGGGCaCCGaCCCGUUC-----------UCUCUau -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 88840 | 0.74 | 0.372327 |
Target: 5'- cUCCCCCGUcGCcgccgGGGCAGGAGuAGAc- -3' miRNA: 3'- -AGGGGGCAcCGa----CCCGUUCUC-UCUau -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 90194 | 0.66 | 0.831076 |
Target: 5'- gCCCCC-UGGCggcggugGGgaaGCGGGAGAGGg- -3' miRNA: 3'- aGGGGGcACCGa------CC---CGUUCUCUCUau -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 102532 | 0.66 | 0.78708 |
Target: 5'- gUCCCCCGggaucuGCUGGGCGGGucccauaaaguacAGAGc-- -3' miRNA: 3'- -AGGGGGCac----CGACCCGUUC-------------UCUCuau -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 108551 | 0.72 | 0.457839 |
Target: 5'- cUCCCgCCGcGGCUGGGgGAGgAGGGGg- -3' miRNA: 3'- -AGGG-GGCaCCGACCCgUUC-UCUCUau -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 111718 | 0.69 | 0.652765 |
Target: 5'- cUCCCCCGUGcGCgcgGcGGCGGGgaucaccagcccGGGGGUGg -3' miRNA: 3'- -AGGGGGCAC-CGa--C-CCGUUC------------UCUCUAU- -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 117143 | 0.73 | 0.396826 |
Target: 5'- gCCCCCGUGGUacuuuaggagGGGCAcgucAGAGGGGg- -3' miRNA: 3'- aGGGGGCACCGa---------CCCGU----UCUCUCUau -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 118034 | 0.7 | 0.581513 |
Target: 5'- gCCCgCGUgccugagGGCgagGGGCGAGGGGGAg- -3' miRNA: 3'- aGGGgGCA-------CCGa--CCCGUUCUCUCUau -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 121852 | 0.69 | 0.631652 |
Target: 5'- gUCCUCGgggGGcCUGGGCAGGAagauccuGAGGUAg -3' miRNA: 3'- aGGGGGCa--CC-GACCCGUUCU-------CUCUAU- -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 129343 | 0.68 | 0.712442 |
Target: 5'- gCCCCCGUguccucGGCcccGGGCGcGGGGGAg- -3' miRNA: 3'- aGGGGGCA------CCGa--CCCGUuCUCUCUau -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 131545 | 0.66 | 0.831076 |
Target: 5'- gCCgCCCGggGGCUGGacGCGGGgcGGAGAa- -3' miRNA: 3'- aGG-GGGCa-CCGACC--CGUUC--UCUCUau -5' |
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3586 | 3' | -58.7 | NC_001650.1 | + | 131740 | 0.67 | 0.778008 |
Target: 5'- gCCCCCGggcGGCcacguugaccgcgUGGGCgAAGAGGGu-- -3' miRNA: 3'- aGGGGGCa--CCG-------------ACCCG-UUCUCUCuau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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