Results 1 - 20 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 175825 | 1.07 | 0.002376 |
Target: 5'- cUCCCCCGUGGCUGGGCAAGAGAGAUAa -3' miRNA: 3'- -AGGGGGCACCGACCCGUUCUCUCUAU- -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 129343 | 0.68 | 0.712442 |
Target: 5'- gCCCCCGUguccucGGCcccGGGCGcGGGGGAg- -3' miRNA: 3'- aGGGGGCA------CCGa--CCCGUuCUCUCUau -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 172819 | 0.67 | 0.731897 |
Target: 5'- gCCCUgGUuGCUGGGCAGacuGAGGGGg- -3' miRNA: 3'- aGGGGgCAcCGACCCGUU---CUCUCUau -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 6854 | 0.66 | 0.831076 |
Target: 5'- gCCCUgGUuGCUGGGCAGacuguGGGGGAc- -3' miRNA: 3'- aGGGGgCAcCGACCCGUU-----CUCUCUau -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 174141 | 0.72 | 0.448813 |
Target: 5'- aCCCCgGUuGCUGGGCAgacuaAGGGGGAa- -3' miRNA: 3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 7434 | 0.72 | 0.448813 |
Target: 5'- aCCCCgGUuGCUGGGCAgacuaAGGGGGAa- -3' miRNA: 3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 163404 | 0.69 | 0.6226 |
Target: 5'- aCCCCCGUGGCUGa--AAGGGuAGAc- -3' miRNA: 3'- aGGGGGCACCGACccgUUCUC-UCUau -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 121852 | 0.69 | 0.631652 |
Target: 5'- gUCCUCGgggGGcCUGGGCAGGAagauccuGAGGUAg -3' miRNA: 3'- aGGGGGCa--CC-GACCCGUUCU-------CUCUAU- -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 173439 | 0.69 | 0.642716 |
Target: 5'- gCCCUgGUuGCUGGGCAgacuaaGGGGAGAc- -3' miRNA: 3'- aGGGGgCAcCGACCCGU------UCUCUCUau -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 2536 | 0.68 | 0.703597 |
Target: 5'- aUCCCCaUGUGGCcaacggggagucaggGGGCAGGguuauGGGGAUGa -3' miRNA: 3'- -AGGGG-GCACCGa--------------CCCGUUC-----UCUCUAU- -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 111718 | 0.69 | 0.652765 |
Target: 5'- cUCCCCCGUGcGCgcgGcGGCGGGgaucaccagcccGGGGGUGg -3' miRNA: 3'- -AGGGGGCAC-CGa--C-CCGUUC------------UCUCUAU- -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 7100 | 0.69 | 0.632658 |
Target: 5'- aCCCUgGUuGCUGGGCAgacuaAGGGGGAa- -3' miRNA: 3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 9118 | 1.07 | 0.002376 |
Target: 5'- cUCCCCCGUGGCUGGGCAAGAGAGAUAa -3' miRNA: 3'- -AGGGGGCACCGACCCGUUCUCUCUAU- -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 155994 | 0.68 | 0.682786 |
Target: 5'- gUCCCCCG-GGCggcGGGUggGGGcGGc- -3' miRNA: 3'- -AGGGGGCaCCGa--CCCGuuCUCuCUau -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 57951 | 0.74 | 0.346591 |
Target: 5'- cUCCCCCGUcgcccaccccgcgaGGCcGGGCAAGAG-GAa- -3' miRNA: 3'- -AGGGGGCA--------------CCGaCCCGUUCUCuCUau -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 173807 | 0.69 | 0.632658 |
Target: 5'- aCCCUgGUuGCUGGGCAgacuaAGGGGGAa- -3' miRNA: 3'- aGGGGgCAcCGACCCGU-----UCUCUCUau -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 169243 | 0.68 | 0.703597 |
Target: 5'- aUCCCCaUGUGGCcaacggggagucaggGGGCAGGguuauGGGGAUGa -3' miRNA: 3'- -AGGGG-GCACCGa--------------CCCGUUC-----UCUCUAU- -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 50856 | 0.68 | 0.72318 |
Target: 5'- cCCCCCGcgGGCaccggccccucgaggGGGCGcaucAGGGAGAUc -3' miRNA: 3'- aGGGGGCa-CCGa--------------CCCGU----UCUCUCUAu -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 88840 | 0.74 | 0.372327 |
Target: 5'- cUCCCCCGUcGCcgccgGGGCAGGAGuAGAc- -3' miRNA: 3'- -AGGGGGCAcCGa----CCCGUUCUC-UCUau -5' |
|||||||
3586 | 3' | -58.7 | NC_001650.1 | + | 118034 | 0.7 | 0.581513 |
Target: 5'- gCCCgCGUgccugagGGCgagGGGCGAGGGGGAg- -3' miRNA: 3'- aGGGgGCA-------CCGa--CCCGUUCUCUCUau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home