miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3586 3' -58.7 NC_001650.1 + 77704 0.67 0.769736
Target:  5'- gCCUCUGUauaGGCgGGGCcuuuucuguagaGAGAGGGAUAg -3'
miRNA:   3'- aGGGGGCA---CCGaCCCG------------UUCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 155642 0.67 0.769736
Target:  5'- gCCgCCGgagggGGCggggaggGGGgAGGAGAGGUGg -3'
miRNA:   3'- aGGgGGCa----CCGa------CCCgUUCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 174871 0.67 0.767884
Target:  5'- -gCCCCGUGGUgauuacacacggGGGCccaauGGGGGAUGu -3'
miRNA:   3'- agGGGGCACCGa-----------CCCGuu---CUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 8164 0.67 0.767884
Target:  5'- -gCCCCGUGGUgauuacacacggGGGCccaauGGGGGAUGu -3'
miRNA:   3'- agGGGGCACCGa-----------CCCGuu---CUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 18522 0.67 0.760432
Target:  5'- gUUCCCCG-GGgaGaGGgGGGAGAGAa- -3'
miRNA:   3'- -AGGGGGCaCCgaC-CCgUUCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 88488 0.67 0.760432
Target:  5'- cUCCUCCG-GGCgGGGCGGGgacgccgggcgGGAGGa- -3'
miRNA:   3'- -AGGGGGCaCCGaCCCGUUC-----------UCUCUau -5'
3586 3' -58.7 NC_001650.1 + 26511 0.67 0.756679
Target:  5'- gUUCCCCGUGGaggaggcgucccucCUGGGCAaccuccacgcgggGGGcGAGGUGu -3'
miRNA:   3'- -AGGGGGCACC--------------GACCCGU-------------UCU-CUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 50549 0.67 0.751019
Target:  5'- gUCCCCGgGGCUcgaggaggccgGGGCcGGGAGGGAc- -3'
miRNA:   3'- aGGGGGCaCCGA-----------CCCG-UUCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 6112 0.67 0.731897
Target:  5'- gCCCUgGUuGCUGGGCAGacuGAGGGGg- -3'
miRNA:   3'- aGGGGgCAcCGACCCGUU---CUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 172819 0.67 0.731897
Target:  5'- gCCCUgGUuGCUGGGCAGacuGAGGGGg- -3'
miRNA:   3'- aGGGGgCAcCGACCCGUU---CUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 164445 0.67 0.731897
Target:  5'- aCCCCCGgcucacccgGGagGGGCu-GAGAGAUAu -3'
miRNA:   3'- aGGGGGCa--------CCgaCCCGuuCUCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 76686 0.67 0.731897
Target:  5'- aCCCCCGUGGCcuugucggcgUGGuGCAGGAacuugaccggcaGGGGg- -3'
miRNA:   3'- aGGGGGCACCG----------ACC-CGUUCU------------CUCUau -5'
3586 3' -58.7 NC_001650.1 + 50856 0.68 0.72318
Target:  5'- cCCCCCGcgGGCaccggccccucgaggGGGCGcaucAGGGAGAUc -3'
miRNA:   3'- aGGGGGCa-CCGa--------------CCCGU----UCUCUCUAu -5'
3586 3' -58.7 NC_001650.1 + 142390 0.68 0.712442
Target:  5'- cUUCCCCGgGGCggUGGGaGAGGGGGGUc -3'
miRNA:   3'- -AGGGGGCaCCG--ACCCgUUCUCUCUAu -5'
3586 3' -58.7 NC_001650.1 + 129343 0.68 0.712442
Target:  5'- gCCCCCGUguccucGGCcccGGGCGcGGGGGAg- -3'
miRNA:   3'- aGGGGGCA------CCGa--CCCGUuCUCUCUau -5'
3586 3' -58.7 NC_001650.1 + 2536 0.68 0.703597
Target:  5'- aUCCCCaUGUGGCcaacggggagucaggGGGCAGGguuauGGGGAUGa -3'
miRNA:   3'- -AGGGG-GCACCGa--------------CCCGUUC-----UCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 169243 0.68 0.703597
Target:  5'- aUCCCCaUGUGGCcaacggggagucaggGGGCAGGguuauGGGGAUGa -3'
miRNA:   3'- -AGGGG-GCACCGa--------------CCCGUUC-----UCUCUAU- -5'
3586 3' -58.7 NC_001650.1 + 36658 0.68 0.682786
Target:  5'- uUCUCCugccugcuggaCGUGGCcGGGCGGGAGGGcUAc -3'
miRNA:   3'- -AGGGG-----------GCACCGaCCCGUUCUCUCuAU- -5'
3586 3' -58.7 NC_001650.1 + 155994 0.68 0.682786
Target:  5'- gUCCCCCG-GGCggcGGGUggGGGcGGc- -3'
miRNA:   3'- -AGGGGGCaCCGa--CCCGuuCUCuCUau -5'
3586 3' -58.7 NC_001650.1 + 111718 0.69 0.652765
Target:  5'- cUCCCCCGUGcGCgcgGcGGCGGGgaucaccagcccGGGGGUGg -3'
miRNA:   3'- -AGGGGGCAC-CGa--C-CCGUUC------------UCUCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.