miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3587 5' -52.2 NC_001650.1 + 111022 0.66 0.99083
Target:  5'- gGCUGGGcaGCCUggcucUGAGGCUGCUGgCg -3'
miRNA:   3'- aUGACUCa-CGGAa----GCUCUGGUGAUgG- -5'
3587 5' -52.2 NC_001650.1 + 137215 0.66 0.988124
Target:  5'- gGCUGGGUGgaccCCUUggcgaacacgUGAGGCCccgcggcgcACUGCCa -3'
miRNA:   3'- aUGACUCAC----GGAA----------GCUCUGG---------UGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 67931 0.66 0.988124
Target:  5'- aUGCUGAG-GCacaucUCGAgGACCAUggGCCu -3'
miRNA:   3'- -AUGACUCaCGga---AGCU-CUGGUGa-UGG- -5'
3587 5' -52.2 NC_001650.1 + 146089 0.66 0.988124
Target:  5'- ---gGAG-GCaCUUCGGGGCCGCgUACg -3'
miRNA:   3'- augaCUCaCG-GAAGCUCUGGUG-AUGg -5'
3587 5' -52.2 NC_001650.1 + 116140 0.66 0.986558
Target:  5'- gGCUGAcauaaacagGUuCCUg-GAGGCCACUGCUg -3'
miRNA:   3'- aUGACU---------CAcGGAagCUCUGGUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 114490 0.66 0.984837
Target:  5'- -cCUGAcgauGgcgGCCUUCGGGACCGggaUGCUg -3'
miRNA:   3'- auGACU----Ca--CGGAAGCUCUGGUg--AUGG- -5'
3587 5' -52.2 NC_001650.1 + 165677 0.67 0.982954
Target:  5'- ---cGGGUGCUUccUCG-GGCCGCUcGCCu -3'
miRNA:   3'- augaCUCACGGA--AGCuCUGGUGA-UGG- -5'
3587 5' -52.2 NC_001650.1 + 171171 0.67 0.982757
Target:  5'- gGCUGGGUGgaggguaCCUcgcggucaUCGcauGACCAUUACCu -3'
miRNA:   3'- aUGACUCAC-------GGA--------AGCu--CUGGUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 4464 0.67 0.982757
Target:  5'- gGCUGGGUGgaggguaCCUcgcggucaUCGcauGACCAUUACCu -3'
miRNA:   3'- aUGACUCAC-------GGA--------AGCu--CUGGUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 68205 0.67 0.9809
Target:  5'- ---gGAGUGCCUguaCGAGugCGCcuCCu -3'
miRNA:   3'- augaCUCACGGAa--GCUCugGUGauGG- -5'
3587 5' -52.2 NC_001650.1 + 114174 0.67 0.9809
Target:  5'- -uCUGuGUGgcugcccgucaCCUUCGAGGCUGuCUACCu -3'
miRNA:   3'- auGACuCAC-----------GGAAGCUCUGGU-GAUGG- -5'
3587 5' -52.2 NC_001650.1 + 156543 0.67 0.978666
Target:  5'- gGCUGAGgcacccccUGCCccccgUCGAGGCC-C-ACCg -3'
miRNA:   3'- aUGACUC--------ACGGa----AGCUCUGGuGaUGG- -5'
3587 5' -52.2 NC_001650.1 + 76844 0.67 0.976244
Target:  5'- gGCcGAGaaggcgcgcGCCUUCGAGACCuucauCUACg -3'
miRNA:   3'- aUGaCUCa--------CGGAAGCUCUGGu----GAUGg -5'
3587 5' -52.2 NC_001650.1 + 156907 0.68 0.97196
Target:  5'- aUGCUGGGaccgGCCUUUGAgcuggcccagcuccaGAUCACcGCCg -3'
miRNA:   3'- -AUGACUCa---CGGAAGCU---------------CUGGUGaUGG- -5'
3587 5' -52.2 NC_001650.1 + 126072 0.68 0.964531
Target:  5'- gUGCUGGGUGCgCUguuggCGAgcGugCACcGCCu -3'
miRNA:   3'- -AUGACUCACG-GAa----GCU--CugGUGaUGG- -5'
3587 5' -52.2 NC_001650.1 + 126008 0.68 0.957365
Target:  5'- cGCUGGGauugauccGCCUUCGAcGCCGC-GCCc -3'
miRNA:   3'- aUGACUCa-------CGGAAGCUcUGGUGaUGG- -5'
3587 5' -52.2 NC_001650.1 + 129000 0.68 0.957365
Target:  5'- aGgUGAGgcagGCCUUCGAGGgCGCggGCg -3'
miRNA:   3'- aUgACUCa---CGGAAGCUCUgGUGa-UGg -5'
3587 5' -52.2 NC_001650.1 + 83373 0.69 0.944861
Target:  5'- cACcGAGUGgCgggcCGAGGCC-CUGCCg -3'
miRNA:   3'- aUGaCUCACgGaa--GCUCUGGuGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 154995 0.69 0.94021
Target:  5'- -cCUGAGcccgGCCacccUUCGGGgcacgugcuGCCACUGCCa -3'
miRNA:   3'- auGACUCa---CGG----AAGCUC---------UGGUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 60046 0.69 0.935313
Target:  5'- -cCUGGGcUGCCUgccCGuGACCAUgGCCg -3'
miRNA:   3'- auGACUC-ACGGAa--GCuCUGGUGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.