miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3588 3' -56.9 NC_001650.1 + 12783 0.66 0.919988
Target:  5'- gGCUaGGGUUAGG-CUa-GGGUUAGGg -3'
miRNA:   3'- gCGAcCCCAGUCCaGAgaCCUAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 155454 0.66 0.919988
Target:  5'- uGCUGGGcGUaCGGGaCgcacCUGGGggUCAGGu -3'
miRNA:   3'- gCGACCC-CA-GUCCaGa---GACCU--AGUCC- -5'
3588 3' -56.9 NC_001650.1 + 69413 0.66 0.919988
Target:  5'- aGCUGGGGguugaugaGGGUCa--GGcUCAGGg -3'
miRNA:   3'- gCGACCCCag------UCCAGagaCCuAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 147617 0.66 0.919988
Target:  5'- cCGCUacaGGGGaaccgcuuUUGGGUCgCUGGcUCGGGg -3'
miRNA:   3'- -GCGA---CCCC--------AGUCCAGaGACCuAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 158971 0.66 0.919988
Target:  5'- uGCUGGuGGUCaucuuaaggaauGGGUCcggGGAUgAGGa -3'
miRNA:   3'- gCGACC-CCAG------------UCCAGagaCCUAgUCC- -5'
3588 3' -56.9 NC_001650.1 + 57550 0.66 0.919438
Target:  5'- gGCUGGGGcugggccUguGGUUgcagcugcggCUGGggCAGGg -3'
miRNA:   3'- gCGACCCC-------AguCCAGa---------GACCuaGUCC- -5'
3588 3' -56.9 NC_001650.1 + 151519 0.66 0.90857
Target:  5'- gGCUccGGuUCAGG-CUCUGGcUCAGGu -3'
miRNA:   3'- gCGAccCC-AGUCCaGAGACCuAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 151477 0.66 0.90857
Target:  5'- gGCUccGGuUCAGG-CUCUGGcUCAGGu -3'
miRNA:   3'- gCGAccCC-AGUCCaGAGACCuAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 151435 0.66 0.90857
Target:  5'- gGCUccGGuUCAGG-CUCUGGcUCAGGu -3'
miRNA:   3'- gCGAccCC-AGUCCaGAGACCuAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 151393 0.66 0.90857
Target:  5'- gGCUccGGuUCAGG-CUCUGGuUCAGGu -3'
miRNA:   3'- gCGAccCC-AGUCCaGAGACCuAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 131445 0.66 0.902524
Target:  5'- gCGUUGGGcaccaGGGUCUCggGGAcCGGGu -3'
miRNA:   3'- -GCGACCCcag--UCCAGAGa-CCUaGUCC- -5'
3588 3' -56.9 NC_001650.1 + 52408 0.67 0.89239
Target:  5'- aGCgUGGGaaaauauuucaaagaGUgGgGGUCUCUGGcgCAGGg -3'
miRNA:   3'- gCG-ACCC---------------CAgU-CCAGAGACCuaGUCC- -5'
3588 3' -56.9 NC_001650.1 + 171358 0.67 0.889769
Target:  5'- ---aGGGGUCuuuguccgggGGGUCUUUGGGggucCGGGg -3'
miRNA:   3'- gcgaCCCCAG----------UCCAGAGACCUa---GUCC- -5'
3588 3' -56.9 NC_001650.1 + 4651 0.67 0.889769
Target:  5'- ---aGGGGUCuuuguccgggGGGUCUUUGGGggucCGGGg -3'
miRNA:   3'- gcgaCCCCAG----------UCCAGAGACCUa---GUCC- -5'
3588 3' -56.9 NC_001650.1 + 90124 0.67 0.889769
Target:  5'- cCGC-GGGGUCugGGGcCUC-GG-UCAGGg -3'
miRNA:   3'- -GCGaCCCCAG--UCCaGAGaCCuAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 145498 0.67 0.883067
Target:  5'- gGCcgGGGGcUCcuGGUCagCUGGAgcuUCAGGg -3'
miRNA:   3'- gCGa-CCCC-AGu-CCAGa-GACCU---AGUCC- -5'
3588 3' -56.9 NC_001650.1 + 88524 0.67 0.869031
Target:  5'- aGCgGGGGcgCcGGUCUCUGGAaaAGa -3'
miRNA:   3'- gCGaCCCCa-GuCCAGAGACCUagUCc -5'
3588 3' -56.9 NC_001650.1 + 1953 0.67 0.869031
Target:  5'- gGCcaaUGGGGagAGGgugggUUGGGUCAGGg -3'
miRNA:   3'- gCG---ACCCCagUCCaga--GACCUAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 168660 0.67 0.869031
Target:  5'- gGCcaaUGGGGagAGGgugggUUGGGUCAGGg -3'
miRNA:   3'- gCG---ACCCCagUCCaga--GACCUAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 85881 0.68 0.846474
Target:  5'- gGCcGGGGUCAGGuuccucuuccUCUUUGGGgagAGGu -3'
miRNA:   3'- gCGaCCCCAGUCC----------AGAGACCUag-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.