miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3588 5' -52.5 NC_001650.1 + 11321 1.13 0.004344
Target:  5'- gGUCCCAUUAGCAUACCCGACCUCACCa -3'
miRNA:   3'- -CAGGGUAAUCGUAUGGGCUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 178028 1.13 0.004344
Target:  5'- gGUCCCAUUAGCAUACCCGACCUCACCa -3'
miRNA:   3'- -CAGGGUAAUCGUAUGGGCUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 167523 0.8 0.431084
Target:  5'- -gCCCGggggagGGCGgcaGCCCGGCCUCGCCc -3'
miRNA:   3'- caGGGUaa----UCGUa--UGGGCUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 27594 0.77 0.576806
Target:  5'- uUCCCG--GGCGUGCCCG-CCUCgGCCc -3'
miRNA:   3'- cAGGGUaaUCGUAUGGGCuGGAG-UGG- -5'
3588 5' -52.5 NC_001650.1 + 66790 0.77 0.587057
Target:  5'- -aUCCG--GGCGUACCCGgugaACCUCGCCa -3'
miRNA:   3'- caGGGUaaUCGUAUGGGC----UGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 145992 0.75 0.700311
Target:  5'- -cCCCGagAGCAggagGCUCGuCCUCACCg -3'
miRNA:   3'- caGGGUaaUCGUa---UGGGCuGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 7820 0.73 0.778861
Target:  5'- -gCCCAaUGGCGggccACCC-ACCUCACCc -3'
miRNA:   3'- caGGGUaAUCGUa---UGGGcUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 171125 0.73 0.778861
Target:  5'- -cCCCAUUGGCcgGCCuCGACCgcagaggGCCg -3'
miRNA:   3'- caGGGUAAUCGuaUGG-GCUGGag-----UGG- -5'
3588 5' -52.5 NC_001650.1 + 174527 0.73 0.778861
Target:  5'- -gCCCAaUGGCGggccACCC-ACCUCACCc -3'
miRNA:   3'- caGGGUaAUCGUa---UGGGcUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 4418 0.73 0.778861
Target:  5'- -cCCCAUUGGCcgGCCuCGACCgcagaggGCCg -3'
miRNA:   3'- caGGGUAAUCGuaUGG-GCUGGag-----UGG- -5'
3588 5' -52.5 NC_001650.1 + 123871 0.73 0.797344
Target:  5'- -cCCCAcu-GCGUGCCCGGgaUCGCCa -3'
miRNA:   3'- caGGGUaauCGUAUGGGCUggAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 57722 0.73 0.807255
Target:  5'- aGUCCCucuuccucuUGCCCGGCCUCGCg -3'
miRNA:   3'- -CAGGGuaaucgu--AUGGGCUGGAGUGg -5'
3588 5' -52.5 NC_001650.1 + 125030 0.72 0.815219
Target:  5'- gGUCCCGggGGCGgaggACgCCGggcggggcGCCUCGCCc -3'
miRNA:   3'- -CAGGGUaaUCGUa---UG-GGC--------UGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 147920 0.72 0.848865
Target:  5'- uUCCCAgUAGCGgugcCCCGAaaCUCACCc -3'
miRNA:   3'- cAGGGUaAUCGUau--GGGCUg-GAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 74871 0.71 0.87202
Target:  5'- cGUCCCccacGUUGGCGUcGCUCaGCCUCGCg -3'
miRNA:   3'- -CAGGG----UAAUCGUA-UGGGcUGGAGUGg -5'
3588 5' -52.5 NC_001650.1 + 135871 0.71 0.87202
Target:  5'- -gCCCGUUccugAGCGUGCCCGugC--ACCg -3'
miRNA:   3'- caGGGUAA----UCGUAUGGGCugGagUGG- -5'
3588 5' -52.5 NC_001650.1 + 112171 0.71 0.886369
Target:  5'- cUCCCucaggAGCAUGCCCGcguccuggaugcGCCccgCGCCg -3'
miRNA:   3'- cAGGGuaa--UCGUAUGGGC------------UGGa--GUGG- -5'
3588 5' -52.5 NC_001650.1 + 25326 0.71 0.886369
Target:  5'- cGUCCCGggAGCAgauCCCGGCCa---- -3'
miRNA:   3'- -CAGGGUaaUCGUau-GGGCUGGagugg -5'
3588 5' -52.5 NC_001650.1 + 23425 0.71 0.893202
Target:  5'- cUCCCG--GGCGUccgagggggGCCCGGCgUCGCUg -3'
miRNA:   3'- cAGGGUaaUCGUA---------UGGGCUGgAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 145981 0.7 0.899802
Target:  5'- -aCCCGUUGGCGU-CCCaGAUCUugaCGCCc -3'
miRNA:   3'- caGGGUAAUCGUAuGGG-CUGGA---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.