miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3588 5' -52.5 NC_001650.1 + 634 0.66 0.986685
Target:  5'- -cCCCAUUGGuCGgucucccccgaggucUGCCCGgagacgggugACCUCACUc -3'
miRNA:   3'- caGGGUAAUC-GU---------------AUGGGC----------UGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 816 0.7 0.918168
Target:  5'- -gCCCGggggagGGCGgcagCCGGCCUCGCCc -3'
miRNA:   3'- caGGGUaa----UCGUaug-GGCUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 2332 0.69 0.939253
Target:  5'- -cCCCGUUGGCcacauggggAUACCCG-CC-CACUa -3'
miRNA:   3'- caGGGUAAUCG---------UAUGGGCuGGaGUGG- -5'
3588 5' -52.5 NC_001650.1 + 4418 0.73 0.778861
Target:  5'- -cCCCAUUGGCcgGCCuCGACCgcagaggGCCg -3'
miRNA:   3'- caGGGUAAUCGuaUGG-GCUGGag-----UGG- -5'
3588 5' -52.5 NC_001650.1 + 4654 0.68 0.952525
Target:  5'- aUUCCAUggaaaaGGUcgGCCCGGCCcUCugCg -3'
miRNA:   3'- cAGGGUAa-----UCGuaUGGGCUGG-AGugG- -5'
3588 5' -52.5 NC_001650.1 + 6191 0.66 0.98778
Target:  5'- cUCCCAUUGGgccuuugggauaauUACCCGAggcCCUCAUg -3'
miRNA:   3'- cAGGGUAAUCgu------------AUGGGCU---GGAGUGg -5'
3588 5' -52.5 NC_001650.1 + 7820 0.73 0.778861
Target:  5'- -gCCCAaUGGCGggccACCC-ACCUCACCc -3'
miRNA:   3'- caGGGUaAUCGUa---UGGGcUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 8063 0.66 0.984269
Target:  5'- -cCCCAUUGGCc--CCCG-CCUaauuaACCa -3'
miRNA:   3'- caGGGUAAUCGuauGGGCuGGAg----UGG- -5'
3588 5' -52.5 NC_001650.1 + 11321 1.13 0.004344
Target:  5'- gGUCCCAUUAGCAUACCCGACCUCACCa -3'
miRNA:   3'- -CAGGGUAAUCGUAUGGGCUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 11505 0.67 0.98235
Target:  5'- gGUCCgAgUAGCAUaACCgGAUCgCACCc -3'
miRNA:   3'- -CAGGgUaAUCGUA-UGGgCUGGaGUGG- -5'
3588 5' -52.5 NC_001650.1 + 15947 0.68 0.960198
Target:  5'- -cCCCA-UAGCuacACCUGGCCUCAg- -3'
miRNA:   3'- caGGGUaAUCGua-UGGGCUGGAGUgg -5'
3588 5' -52.5 NC_001650.1 + 20934 0.66 0.989084
Target:  5'- -gCCCAUggcGUGUACCCaaACCUCAgCa -3'
miRNA:   3'- caGGGUAau-CGUAUGGGc-UGGAGUgG- -5'
3588 5' -52.5 NC_001650.1 + 23425 0.71 0.893202
Target:  5'- cUCCCG--GGCGUccgagggggGCCCGGCgUCGCUg -3'
miRNA:   3'- cAGGGUaaUCGUA---------UGGGCUGgAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 24610 0.7 0.925991
Target:  5'- -cCCCGUaAGCGUgccuguugaagcaggGCCCGuACCUCuCCa -3'
miRNA:   3'- caGGGUAaUCGUA---------------UGGGC-UGGAGuGG- -5'
3588 5' -52.5 NC_001650.1 + 25326 0.71 0.886369
Target:  5'- cGUCCCGggAGCAgauCCCGGCCa---- -3'
miRNA:   3'- -CAGGGUaaUCGUau-GGGCUGGagugg -5'
3588 5' -52.5 NC_001650.1 + 27099 0.68 0.951294
Target:  5'- -gCCCAggcgcucagggucagGGaCGUGCCgGGCCUCAUCg -3'
miRNA:   3'- caGGGUaa-------------UC-GUAUGGgCUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 27594 0.77 0.576806
Target:  5'- uUCCCG--GGCGUGCCCG-CCUCgGCCc -3'
miRNA:   3'- cAGGGUaaUCGUAUGGGCuGGAG-UGG- -5'
3588 5' -52.5 NC_001650.1 + 32322 0.66 0.986026
Target:  5'- cUgCCGUUcagGGUAUGCggGGCCUCGCCu -3'
miRNA:   3'- cAgGGUAA---UCGUAUGggCUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 44183 0.67 0.975534
Target:  5'- uUCCCAUgcuuuUGGUAUGCCUcGCUUCcCCu -3'
miRNA:   3'- cAGGGUA-----AUCGUAUGGGcUGGAGuGG- -5'
3588 5' -52.5 NC_001650.1 + 44614 0.66 0.984269
Target:  5'- uGUCCC--UGGCGUuguguccucACCC--CCUCACCc -3'
miRNA:   3'- -CAGGGuaAUCGUA---------UGGGcuGGAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.