miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3588 5' -52.5 NC_001650.1 + 178212 0.67 0.98235
Target:  5'- gGUCCgAgUAGCAUaACCgGAUCgCACCc -3'
miRNA:   3'- -CAGGgUaAUCGUA-UGGgCUGGaGUGG- -5'
3588 5' -52.5 NC_001650.1 + 178028 1.13 0.004344
Target:  5'- gGUCCCAUUAGCAUACCCGACCUCACCa -3'
miRNA:   3'- -CAGGGUAAUCGUAUGGGCUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 174770 0.66 0.984269
Target:  5'- -cCCCAUUGGCc--CCCG-CCUaauuaACCa -3'
miRNA:   3'- caGGGUAAUCGuauGGGCuGGAg----UGG- -5'
3588 5' -52.5 NC_001650.1 + 174527 0.73 0.778861
Target:  5'- -gCCCAaUGGCGggccACCC-ACCUCACCc -3'
miRNA:   3'- caGGGUaAUCGUa---UGGGcUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 172898 0.66 0.98778
Target:  5'- cUCCCAUUGGgccuuugggauaauUACCCGAggcCCUCAUg -3'
miRNA:   3'- cAGGGUAAUCgu------------AUGGGCU---GGAGUGg -5'
3588 5' -52.5 NC_001650.1 + 171361 0.68 0.952525
Target:  5'- aUUCCAUggaaaaGGUcgGCCCGGCCcUCugCg -3'
miRNA:   3'- cAGGGUAa-----UCGuaUGGGCUGG-AGugG- -5'
3588 5' -52.5 NC_001650.1 + 171125 0.73 0.778861
Target:  5'- -cCCCAUUGGCcgGCCuCGACCgcagaggGCCg -3'
miRNA:   3'- caGGGUAAUCGuaUGG-GCUGGag-----UGG- -5'
3588 5' -52.5 NC_001650.1 + 169039 0.69 0.939253
Target:  5'- -cCCCGUUGGCcacauggggAUACCCG-CC-CACUa -3'
miRNA:   3'- caGGGUAAUCG---------UAUGGGCuGGaGUGG- -5'
3588 5' -52.5 NC_001650.1 + 167523 0.8 0.431084
Target:  5'- -gCCCGggggagGGCGgcaGCCCGGCCUCGCCc -3'
miRNA:   3'- caGGGUaa----UCGUa--UGGGCUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 167341 0.66 0.986685
Target:  5'- -cCCCAUUGGuCGgucucccccgaggucUGCCCGgagacgggugACCUCACUc -3'
miRNA:   3'- caGGGUAAUC-GU---------------AUGGGC----------UGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 163079 0.69 0.948339
Target:  5'- uGUCCac-UAGCAgcccgGCUCGACUUCugCu -3'
miRNA:   3'- -CAGGguaAUCGUa----UGGGCUGGAGugG- -5'
3588 5' -52.5 NC_001650.1 + 158669 0.7 0.899802
Target:  5'- gGUCCaggUGGCuaACCUGACCUCggggGCCa -3'
miRNA:   3'- -CAGGguaAUCGuaUGGGCUGGAG----UGG- -5'
3588 5' -52.5 NC_001650.1 + 155969 0.66 0.990404
Target:  5'- --gCCGUgcuguGCcUGCCCGGCUgCACCg -3'
miRNA:   3'- cagGGUAau---CGuAUGGGCUGGaGUGG- -5'
3588 5' -52.5 NC_001650.1 + 155253 0.66 0.986026
Target:  5'- cGUCCCGUacgcccAGCAggggaggauguUACCCGccagguGCCUCAgCg -3'
miRNA:   3'- -CAGGGUAa-----UCGU-----------AUGGGC------UGGAGUgG- -5'
3588 5' -52.5 NC_001650.1 + 147920 0.72 0.848865
Target:  5'- uUCCCAgUAGCGgugcCCCGAaaCUCACCc -3'
miRNA:   3'- cAGGGUaAUCGUau--GGGCUg-GAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 147877 0.66 0.986026
Target:  5'- -cCCCAg-AGCGgcuCCCGGCCgcgcuuccCACCg -3'
miRNA:   3'- caGGGUaaUCGUau-GGGCUGGa-------GUGG- -5'
3588 5' -52.5 NC_001650.1 + 145992 0.75 0.700311
Target:  5'- -cCCCGagAGCAggagGCUCGuCCUCACCg -3'
miRNA:   3'- caGGGUaaUCGUa---UGGGCuGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 145981 0.7 0.899802
Target:  5'- -aCCCGUUGGCGU-CCCaGAUCUugaCGCCc -3'
miRNA:   3'- caGGGUAAUCGUAuGGG-CUGGA---GUGG- -5'
3588 5' -52.5 NC_001650.1 + 141424 0.69 0.934347
Target:  5'- cUCCCGau-GC--GCCCGAUCUCAUCc -3'
miRNA:   3'- cAGGGUaauCGuaUGGGCUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 137277 0.68 0.960198
Target:  5'- cGUCCCGggcUGGCAgaugaaggACCUGACC--ACCu -3'
miRNA:   3'- -CAGGGUa--AUCGUa-------UGGGCUGGagUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.