miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3588 5' -52.5 NC_001650.1 + 108634 0.68 0.97003
Target:  5'- aUCCU---GGCcgaccACCCGGCCUCGCg -3'
miRNA:   3'- cAGGGuaaUCGua---UGGGCUGGAGUGg -5'
3588 5' -52.5 NC_001650.1 + 169039 0.69 0.939253
Target:  5'- -cCCCGUUGGCcacauggggAUACCCG-CC-CACUa -3'
miRNA:   3'- caGGGUAAUCG---------UAUGGGCuGGaGUGG- -5'
3588 5' -52.5 NC_001650.1 + 100440 0.69 0.947908
Target:  5'- cUCCCAggGGCccccggacggcgcGUACCCGggguACCUgACCc -3'
miRNA:   3'- cAGGGUaaUCG-------------UAUGGGC----UGGAgUGG- -5'
3588 5' -52.5 NC_001650.1 + 27099 0.68 0.951294
Target:  5'- -gCCCAggcgcucagggucagGGaCGUGCCgGGCCUCAUCg -3'
miRNA:   3'- caGGGUaa-------------UC-GUAUGGgCUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 15947 0.68 0.960198
Target:  5'- -cCCCA-UAGCuacACCUGGCCUCAg- -3'
miRNA:   3'- caGGGUaAUCGua-UGGGCUGGAGUgg -5'
3588 5' -52.5 NC_001650.1 + 60095 0.68 0.960198
Target:  5'- -gCCCGccgAGgGUcugGCCCGACC-CGCCg -3'
miRNA:   3'- caGGGUaa-UCgUA---UGGGCUGGaGUGG- -5'
3588 5' -52.5 NC_001650.1 + 137277 0.68 0.960198
Target:  5'- cGUCCCGggcUGGCAgaugaaggACCUGACC--ACCu -3'
miRNA:   3'- -CAGGGUa--AUCGUa-------UGGGCUGGagUGG- -5'
3588 5' -52.5 NC_001650.1 + 68949 0.68 0.966969
Target:  5'- cUCCC--UGGCuaccacccUGCCCGGCCUgGCUc -3'
miRNA:   3'- cAGGGuaAUCGu-------AUGGGCUGGAgUGG- -5'
3588 5' -52.5 NC_001650.1 + 124386 0.68 0.97003
Target:  5'- -gCCCAUgAGCGaggaccGCCCGGCCUC-Cg -3'
miRNA:   3'- caGGGUAaUCGUa-----UGGGCUGGAGuGg -5'
3588 5' -52.5 NC_001650.1 + 2332 0.69 0.939253
Target:  5'- -cCCCGUUGGCcacauggggAUACCCG-CC-CACUa -3'
miRNA:   3'- caGGGUAAUCG---------UAUGGGCuGGaGUGG- -5'
3588 5' -52.5 NC_001650.1 + 61344 0.7 0.923805
Target:  5'- -gCCCuc-AGCAUGCCCG-CCUUgACCc -3'
miRNA:   3'- caGGGuaaUCGUAUGGGCuGGAG-UGG- -5'
3588 5' -52.5 NC_001650.1 + 89887 0.7 0.906164
Target:  5'- aGUCCCuggacGCGgcCCUGAgCCUCACCc -3'
miRNA:   3'- -CAGGGuaau-CGUauGGGCU-GGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 66790 0.77 0.587057
Target:  5'- -aUCCG--GGCGUACCCGgugaACCUCGCCa -3'
miRNA:   3'- caGGGUaaUCGUAUGGGC----UGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 4418 0.73 0.778861
Target:  5'- -cCCCAUUGGCcgGCCuCGACCgcagaggGCCg -3'
miRNA:   3'- caGGGUAAUCGuaUGG-GCUGGag-----UGG- -5'
3588 5' -52.5 NC_001650.1 + 171125 0.73 0.778861
Target:  5'- -cCCCAUUGGCcgGCCuCGACCgcagaggGCCg -3'
miRNA:   3'- caGGGUAAUCGuaUGG-GCUGGag-----UGG- -5'
3588 5' -52.5 NC_001650.1 + 123871 0.73 0.797344
Target:  5'- -cCCCAcu-GCGUGCCCGGgaUCGCCa -3'
miRNA:   3'- caGGGUaauCGUAUGGGCUggAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 57722 0.73 0.807255
Target:  5'- aGUCCCucuuccucuUGCCCGGCCUCGCg -3'
miRNA:   3'- -CAGGGuaaucgu--AUGGGCUGGAGUGg -5'
3588 5' -52.5 NC_001650.1 + 125030 0.72 0.815219
Target:  5'- gGUCCCGggGGCGgaggACgCCGggcggggcGCCUCGCCc -3'
miRNA:   3'- -CAGGGUaaUCGUa---UG-GGC--------UGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 158669 0.7 0.899802
Target:  5'- gGUCCaggUGGCuaACCUGACCUCggggGCCa -3'
miRNA:   3'- -CAGGguaAUCGuaUGGGCUGGAG----UGG- -5'
3588 5' -52.5 NC_001650.1 + 145981 0.7 0.899802
Target:  5'- -aCCCGUUGGCGU-CCCaGAUCUugaCGCCc -3'
miRNA:   3'- caGGGUAAUCGUAuGGG-CUGGA---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.