miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3589 5' -47.7 NC_001650.1 + 71382 0.66 0.999879
Target:  5'- cCCUGCgccGGCGcgcUCCA--GGCCGCc -3'
miRNA:   3'- -GGACGa--UCGUauuAGGUuaUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 88259 0.66 0.999843
Target:  5'- uCCUGUgggAGCGggagcUCCGG-GGCCACa -3'
miRNA:   3'- -GGACGa--UCGUauu--AGGUUaUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 43910 0.66 0.99974
Target:  5'- aUCUGgUGGCAgac-CCuGUGGCCGCc -3'
miRNA:   3'- -GGACgAUCGUauuaGGuUAUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 65206 0.66 0.99974
Target:  5'- aCgUGCUGGCccgcguccUCCAGgccGGCCACg -3'
miRNA:   3'- -GgACGAUCGuauu----AGGUUa--UCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 180145 0.66 0.9997
Target:  5'- gCCUGaggcacuaucaaaGGCAUAAUCCAAaGGCUAUUu -3'
miRNA:   3'- -GGACga-----------UCGUAUUAGGUUaUCGGUGA- -5'
3589 5' -47.7 NC_001650.1 + 13438 0.66 0.9997
Target:  5'- gCCUGaggcacuaucaaaGGCAUAAUCCAAaGGCUAUUu -3'
miRNA:   3'- -GGACga-----------UCGUAUUAGGUUaUCGGUGA- -5'
3589 5' -47.7 NC_001650.1 + 178752 0.66 0.999654
Target:  5'- -aUGCUAGCAggagcagUAuagauccaaacuaAUCCAGUAGCCuCUu -3'
miRNA:   3'- ggACGAUCGU-------AU-------------UAGGUUAUCGGuGA- -5'
3589 5' -47.7 NC_001650.1 + 12045 0.66 0.999654
Target:  5'- -aUGCUAGCAggagcagUAuagauccaaacuaAUCCAGUAGCCuCUu -3'
miRNA:   3'- ggACGAUCGU-------AU-------------UAGGUUAUCGGuGA- -5'
3589 5' -47.7 NC_001650.1 + 138700 0.67 0.999583
Target:  5'- gUCUGCcAGCAUGGccccugucUCCAgcAUGGCCcCUg -3'
miRNA:   3'- -GGACGaUCGUAUU--------AGGU--UAUCGGuGA- -5'
3589 5' -47.7 NC_001650.1 + 60975 0.67 0.999478
Target:  5'- cUCUGCaUGGCGcuGUCgGucAUGGCCGCg -3'
miRNA:   3'- -GGACG-AUCGUauUAGgU--UAUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 62176 0.67 0.999478
Target:  5'- --aGCUGGCAaagUAuUCCAGcgugGGCCACc -3'
miRNA:   3'- ggaCGAUCGU---AUuAGGUUa---UCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 156478 0.67 0.999478
Target:  5'- cCCUGgUGGCccgcgggcugGUGA-CCGcgGGCCACg -3'
miRNA:   3'- -GGACgAUCG----------UAUUaGGUuaUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 164370 0.67 0.99935
Target:  5'- uCCUGCUgcgAGUGUGGUCCGc--GCUGCa -3'
miRNA:   3'- -GGACGA---UCGUAUUAGGUuauCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 68310 0.67 0.99901
Target:  5'- cCCUGCaGGUccaggGUGGaguUCCAGUuGGCCACg -3'
miRNA:   3'- -GGACGaUCG-----UAUU---AGGUUA-UCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 175093 0.67 0.99901
Target:  5'- cCCUGCcccuCAUAG-CCAuUGGCCACa -3'
miRNA:   3'- -GGACGauc-GUAUUaGGUuAUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 8386 0.67 0.99901
Target:  5'- cCCUGCcccuCAUAG-CCAuUGGCCACa -3'
miRNA:   3'- -GGACGauc-GUAUUaGGUuAUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 51517 0.68 0.99879
Target:  5'- gCCgaGCUGGCccag-CCAcUGGCCACg -3'
miRNA:   3'- -GGa-CGAUCGuauuaGGUuAUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 29366 0.68 0.998223
Target:  5'- aCCUGCUcaggcGCAgcGUCCAGggGGCgGCg -3'
miRNA:   3'- -GGACGAu----CGUauUAGGUUa-UCGgUGa -5'
3589 5' -47.7 NC_001650.1 + 99075 0.68 0.997865
Target:  5'- gCCU-CUGGCA--GUCCAcgcAGCCACa -3'
miRNA:   3'- -GGAcGAUCGUauUAGGUua-UCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 142339 0.68 0.997865
Target:  5'- cCCgGCUGGaaggaGUGcUCCAggAGCCGCg -3'
miRNA:   3'- -GGaCGAUCg----UAUuAGGUuaUCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.