miRNA display CGI


Results 41 - 60 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 118733 0.72 0.596718
Target:  5'- -aUCUGCAgCGCGcucucguacACCGCCC-CCCGCc -3'
miRNA:   3'- ccAGACGUgGUGU---------UGGUGGGuGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 93228 0.72 0.606765
Target:  5'- ----cGCGCCACGGCCgaaACgCGCCCGCg -3'
miRNA:   3'- ccagaCGUGGUGUUGG---UGgGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 42733 0.72 0.626906
Target:  5'- cGGUCcgggcGCGCCGgugGCCACCUGCCCAa -3'
miRNA:   3'- -CCAGa----CGUGGUgu-UGGUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 848 0.72 0.626906
Target:  5'- gGGUCUGCcugGCaACAGCCuaccucACUCACCCAUa -3'
miRNA:   3'- -CCAGACG---UGgUGUUGG------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 167555 0.72 0.626906
Target:  5'- gGGUCUGCcugGCaACAGCCuaccucACUCACCCAUa -3'
miRNA:   3'- -CCAGACG---UGgUGUUGG------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 89722 0.71 0.636985
Target:  5'- aGUCUGUgggcgaGCCugGgagACCACCC-CCCGCc -3'
miRNA:   3'- cCAGACG------UGGugU---UGGUGGGuGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 72931 0.71 0.636985
Target:  5'- cGUCUGCcccaccagcuugGCCcucucgugggugGCGACCGCCUGCCCAg -3'
miRNA:   3'- cCAGACG------------UGG------------UGUUGGUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 163047 0.71 0.636985
Target:  5'- cGGUC-GCAacCCGC-GCCGCCCGCCUg- -3'
miRNA:   3'- -CCAGaCGU--GGUGuUGGUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 110916 0.71 0.647062
Target:  5'- --gCUGCugCgGCAGCCugGCCUGCCCGCu -3'
miRNA:   3'- ccaGACGugG-UGUUGG--UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 77046 0.71 0.667172
Target:  5'- --gCUGCGCgGCGGCC-CUCAUCCGCu -3'
miRNA:   3'- ccaGACGUGgUGUUGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 104944 0.71 0.67719
Target:  5'- gGGUCaGCACCACAucgUCGUCC-CCCACa -3'
miRNA:   3'- -CCAGaCGUGGUGUu--GGUGGGuGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 156256 0.71 0.67719
Target:  5'- cGUCgugGC-CCGCggUCACCaGCCCGCg -3'
miRNA:   3'- cCAGa--CGuGGUGuuGGUGGgUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 21746 0.71 0.687171
Target:  5'- gGGUC--CACCGCAGCCgcgGCCCuCCCAg -3'
miRNA:   3'- -CCAGacGUGGUGUUGG---UGGGuGGGUg -5'
3592 5' -56.7 NC_001650.1 + 93144 0.71 0.687171
Target:  5'- cGGUCUuuGCCGcCAGCCcccggauCCUGCCCACu -3'
miRNA:   3'- -CCAGAcgUGGU-GUUGGu------GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 111304 0.71 0.687171
Target:  5'- ---gUGCccGCCGCAGCCuuGCCCACCCu- -3'
miRNA:   3'- ccagACG--UGGUGUUGG--UGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 54774 0.71 0.687171
Target:  5'- -uUUUGgACCcguggcucGCGACCACCCACCCuCg -3'
miRNA:   3'- ccAGACgUGG--------UGUUGGUGGGUGGGuG- -5'
3592 5' -56.7 NC_001650.1 + 41720 0.71 0.687171
Target:  5'- -cUCgGUGCuCugGACCACCaCACCCACc -3'
miRNA:   3'- ccAGaCGUG-GugUUGGUGG-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 180959 0.7 0.697109
Target:  5'- --cCUGC-CCACAuggACC-CCUGCCCACa -3'
miRNA:   3'- ccaGACGuGGUGU---UGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 14284 0.7 0.697109
Target:  5'- --cCUGC-CCACAuggACC-CCUGCCCACa -3'
miRNA:   3'- ccaGACGuGGUGU---UGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 94420 0.7 0.697109
Target:  5'- cGG-CUGC-CCAU-ACCACCCaacaucACCCACc -3'
miRNA:   3'- -CCaGACGuGGUGuUGGUGGG------UGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.