Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3595 | 5' | -60.1 | NC_001650.1 | + | 19033 | 1.11 | 0.000955 |
Target: 5'- uGAAUGGCCGAGGCCGUGCUGGCCAGCa -3' miRNA: 3'- -CUUACCGGCUCCGGCACGACCGGUCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 129881 | 0.81 | 0.122036 |
Target: 5'- ---aGGCCGAGGCCGUGgaGGCUaaaaugAGCc -3' miRNA: 3'- cuuaCCGGCUCCGGCACgaCCGG------UCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 107985 | 0.79 | 0.168793 |
Target: 5'- cGggUGcaCCGAGGCCcaguucGUGCUGGUCAGCu -3' miRNA: 3'- -CuuACc-GGCUCCGG------CACGACCGGUCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 64984 | 0.78 | 0.181657 |
Target: 5'- -uAUGGCCGuGGCCGgccuggaggacGCgGGCCAGCa -3' miRNA: 3'- cuUACCGGCuCCGGCa----------CGaCCGGUCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 131839 | 0.76 | 0.230416 |
Target: 5'- ---cGGCCGccagcucGGGCCG-GgUGGCCAGCa -3' miRNA: 3'- cuuaCCGGC-------UCCGGCaCgACCGGUCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 181668 | 0.76 | 0.236468 |
Target: 5'- ---gGGCUGGGGUCGcGC-GGCCAGCa -3' miRNA: 3'- cuuaCCGGCUCCGGCaCGaCCGGUCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 14961 | 0.76 | 0.236468 |
Target: 5'- ---gGGCUGGGGUCGcGC-GGCCAGCa -3' miRNA: 3'- cuuaCCGGCUCCGGCaCGaCCGGUCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 22333 | 0.75 | 0.26567 |
Target: 5'- ---cGGCUGGGGCaaCGUGCUGGgCCuGCa -3' miRNA: 3'- cuuaCCGGCUCCG--GCACGACC-GGuCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 53903 | 0.75 | 0.291081 |
Target: 5'- uGAuUGGUCGAGaGCCG-GCUGGCCcucucGGCc -3' miRNA: 3'- -CUuACCGGCUC-CGGCaCGACCGG-----UCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 60285 | 0.75 | 0.297724 |
Target: 5'- ---cGGCUGAGGCC--GCUGGgCGGCg -3' miRNA: 3'- cuuaCCGGCUCCGGcaCGACCgGUCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 108845 | 0.74 | 0.304484 |
Target: 5'- ---aGGCgCGAGGCCG-GgUGGUCGGCc -3' miRNA: 3'- cuuaCCG-GCUCCGGCaCgACCGGUCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 82397 | 0.74 | 0.318356 |
Target: 5'- ---aGGCgGuGGCCGaGCUGGCCAaGCc -3' miRNA: 3'- cuuaCCGgCuCCGGCaCGACCGGU-CG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 83380 | 0.73 | 0.378518 |
Target: 5'- uGGcgGGCCGAGGCCcUGCcgucGGuaCCAGCu -3' miRNA: 3'- -CUuaCCGGCUCCGGcACGa---CC--GGUCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 132837 | 0.73 | 0.378518 |
Target: 5'- gGGAUGGggGAGGCCGccUGCagguugggGGCCAGCg -3' miRNA: 3'- -CUUACCggCUCCGGC--ACGa-------CCGGUCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 92299 | 0.73 | 0.386556 |
Target: 5'- ---cGGCCGAGcacGCCaaGCUGuGCCAGCu -3' miRNA: 3'- cuuaCCGGCUC---CGGcaCGAC-CGGUCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 121586 | 0.72 | 0.428388 |
Target: 5'- ---cGGCCGGGGCga---UGGCCAGCa -3' miRNA: 3'- cuuaCCGGCUCCGgcacgACCGGUCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 65271 | 0.72 | 0.428388 |
Target: 5'- aGGUGGCCGucauGGCCc-GCaggagGGCCAGCu -3' miRNA: 3'- cUUACCGGCu---CCGGcaCGa----CCGGUCG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 49197 | 0.72 | 0.428388 |
Target: 5'- --cUGGCCGAGGgCGaGCUGcGCCugguGCu -3' miRNA: 3'- cuuACCGGCUCCgGCaCGAC-CGGu---CG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 158257 | 0.72 | 0.428388 |
Target: 5'- ---gGGCUGGcGGCCGUGgaGGCCuggauGCc -3' miRNA: 3'- cuuaCCGGCU-CCGGCACgaCCGGu----CG- -5' |
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3595 | 5' | -60.1 | NC_001650.1 | + | 60185 | 0.72 | 0.437071 |
Target: 5'- ---aGGCCGGGGUC-UGCgggcggcgGGUCAGCa -3' miRNA: 3'- cuuaCCGGCUCCGGcACGa-------CCGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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