miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3595 5' -60.1 NC_001650.1 + 597 0.66 0.744188
Target:  5'- uGAggGGgCGAGGCCGgGCUG-CC-GCc -3'
miRNA:   3'- -CUuaCCgGCUCCGGCaCGACcGGuCG- -5'
3595 5' -60.1 NC_001650.1 + 14961 0.76 0.236468
Target:  5'- ---gGGCUGGGGUCGcGC-GGCCAGCa -3'
miRNA:   3'- cuuaCCGGCUCCGGCaCGaCCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 15562 0.68 0.62694
Target:  5'- ---gGGCCGGuuguuGGCCGcucgGCUGGUUGGUg -3'
miRNA:   3'- cuuaCCGGCU-----CCGGCa---CGACCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 19033 1.11 0.000955
Target:  5'- uGAAUGGCCGAGGCCGUGCUGGCCAGCa -3'
miRNA:   3'- -CUUACCGGCUCCGGCACGACCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 21631 0.68 0.63588
Target:  5'- cGGggGGCugaccccCGGGGCCGUGCU-GCCAcGUg -3'
miRNA:   3'- -CUuaCCG-------GCUCCGGCACGAcCGGU-CG- -5'
3595 5' -60.1 NC_001650.1 + 22333 0.75 0.26567
Target:  5'- ---cGGCUGGGGCaaCGUGCUGGgCCuGCa -3'
miRNA:   3'- cuuaCCGGCUCCG--GCACGACC-GGuCG- -5'
3595 5' -60.1 NC_001650.1 + 23543 0.69 0.597194
Target:  5'- ---aGGCCGGGGCCaagaUGGCCauAGCc -3'
miRNA:   3'- cuuaCCGGCUCCGGcacgACCGG--UCG- -5'
3595 5' -60.1 NC_001650.1 + 27769 0.67 0.693194
Target:  5'- ---aGGCCGuucuccuuuuggguGGGCuCGgcagGCaGGCCAGCc -3'
miRNA:   3'- cuuaCCGGC--------------UCCG-GCa---CGaCCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 35284 0.71 0.445854
Target:  5'- gGGcgGGCCGGGGaCGgGCgcgGGCCAGg -3'
miRNA:   3'- -CUuaCCGGCUCCgGCaCGa--CCGGUCg -5'
3595 5' -60.1 NC_001650.1 + 36341 0.66 0.781024
Target:  5'- aGGUGGCCGGGGUgGUGCccaUagacauguaccaGGUguGCa -3'
miRNA:   3'- cUUACCGGCUCCGgCACG---A------------CCGguCG- -5'
3595 5' -60.1 NC_001650.1 + 36419 0.66 0.781024
Target:  5'- cGGUGGCCGGGGa-GUGCguggGcGCCAa- -3'
miRNA:   3'- cUUACCGGCUCCggCACGa---C-CGGUcg -5'
3595 5' -60.1 NC_001650.1 + 37570 0.69 0.557897
Target:  5'- uGAUGGgggaCGAGGCgGUGCgggcggcGGCCgAGCg -3'
miRNA:   3'- cUUACCg---GCUCCGgCACGa------CCGG-UCG- -5'
3595 5' -60.1 NC_001650.1 + 38133 0.68 0.65672
Target:  5'- ---cGGCCGGGGggaugUUGUGCUgGGCC-GCg -3'
miRNA:   3'- cuuaCCGGCUCC-----GGCACGA-CCGGuCG- -5'
3595 5' -60.1 NC_001650.1 + 46238 0.66 0.761902
Target:  5'- --uUGGCCGcGGCCGcUGUcaaucagcgauccUGGCCcGUg -3'
miRNA:   3'- cuuACCGGCuCCGGC-ACG-------------ACCGGuCG- -5'
3595 5' -60.1 NC_001650.1 + 48173 0.66 0.734727
Target:  5'- cGGUGGUgGGGaGCC-UGCUGGUgaUAGCg -3'
miRNA:   3'- cUUACCGgCUC-CGGcACGACCG--GUCG- -5'
3595 5' -60.1 NC_001650.1 + 49197 0.72 0.428388
Target:  5'- --cUGGCCGAGGgCGaGCUGcGCCugguGCu -3'
miRNA:   3'- cuuACCGGCUCCgGCaCGAC-CGGu---CG- -5'
3595 5' -60.1 NC_001650.1 + 49286 0.68 0.617012
Target:  5'- cGAGcuGCCcccGGGCCuggaGCUGGCCAGCg -3'
miRNA:   3'- -CUUacCGGc--UCCGGca--CGACCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 50532 0.66 0.734727
Target:  5'- ---aGGCCGGGGCCG-GgaGGgacgaGGCg -3'
miRNA:   3'- cuuaCCGGCUCCGGCaCgaCCgg---UCG- -5'
3595 5' -60.1 NC_001650.1 + 53903 0.75 0.291081
Target:  5'- uGAuUGGUCGAGaGCCG-GCUGGCCcucucGGCc -3'
miRNA:   3'- -CUuACCGGCUC-CGGCaCGACCGG-----UCG- -5'
3595 5' -60.1 NC_001650.1 + 57410 0.67 0.69515
Target:  5'- ----aGCCGcagcagcAGGCCuuuGUGgaGGCCAGCa -3'
miRNA:   3'- cuuacCGGC-------UCCGG---CACgaCCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.