miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3595 5' -60.1 NC_001650.1 + 19033 1.11 0.000955
Target:  5'- uGAAUGGCCGAGGCCGUGCUGGCCAGCa -3'
miRNA:   3'- -CUUACCGGCUCCGGCACGACCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 129881 0.81 0.122036
Target:  5'- ---aGGCCGAGGCCGUGgaGGCUaaaaugAGCc -3'
miRNA:   3'- cuuaCCGGCUCCGGCACgaCCGG------UCG- -5'
3595 5' -60.1 NC_001650.1 + 107985 0.79 0.168793
Target:  5'- cGggUGcaCCGAGGCCcaguucGUGCUGGUCAGCu -3'
miRNA:   3'- -CuuACc-GGCUCCGG------CACGACCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 64984 0.78 0.181657
Target:  5'- -uAUGGCCGuGGCCGgccuggaggacGCgGGCCAGCa -3'
miRNA:   3'- cuUACCGGCuCCGGCa----------CGaCCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 131839 0.76 0.230416
Target:  5'- ---cGGCCGccagcucGGGCCG-GgUGGCCAGCa -3'
miRNA:   3'- cuuaCCGGC-------UCCGGCaCgACCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 181668 0.76 0.236468
Target:  5'- ---gGGCUGGGGUCGcGC-GGCCAGCa -3'
miRNA:   3'- cuuaCCGGCUCCGGCaCGaCCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 14961 0.76 0.236468
Target:  5'- ---gGGCUGGGGUCGcGC-GGCCAGCa -3'
miRNA:   3'- cuuaCCGGCUCCGGCaCGaCCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 22333 0.75 0.26567
Target:  5'- ---cGGCUGGGGCaaCGUGCUGGgCCuGCa -3'
miRNA:   3'- cuuaCCGGCUCCG--GCACGACC-GGuCG- -5'
3595 5' -60.1 NC_001650.1 + 53903 0.75 0.291081
Target:  5'- uGAuUGGUCGAGaGCCG-GCUGGCCcucucGGCc -3'
miRNA:   3'- -CUuACCGGCUC-CGGCaCGACCGG-----UCG- -5'
3595 5' -60.1 NC_001650.1 + 60285 0.75 0.297724
Target:  5'- ---cGGCUGAGGCC--GCUGGgCGGCg -3'
miRNA:   3'- cuuaCCGGCUCCGGcaCGACCgGUCG- -5'
3595 5' -60.1 NC_001650.1 + 108845 0.74 0.304484
Target:  5'- ---aGGCgCGAGGCCG-GgUGGUCGGCc -3'
miRNA:   3'- cuuaCCG-GCUCCGGCaCgACCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 82397 0.74 0.318356
Target:  5'- ---aGGCgGuGGCCGaGCUGGCCAaGCc -3'
miRNA:   3'- cuuaCCGgCuCCGGCaCGACCGGU-CG- -5'
3595 5' -60.1 NC_001650.1 + 83380 0.73 0.378518
Target:  5'- uGGcgGGCCGAGGCCcUGCcgucGGuaCCAGCu -3'
miRNA:   3'- -CUuaCCGGCUCCGGcACGa---CC--GGUCG- -5'
3595 5' -60.1 NC_001650.1 + 132837 0.73 0.378518
Target:  5'- gGGAUGGggGAGGCCGccUGCagguugggGGCCAGCg -3'
miRNA:   3'- -CUUACCggCUCCGGC--ACGa-------CCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 92299 0.73 0.386556
Target:  5'- ---cGGCCGAGcacGCCaaGCUGuGCCAGCu -3'
miRNA:   3'- cuuaCCGGCUC---CGGcaCGAC-CGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 121586 0.72 0.428388
Target:  5'- ---cGGCCGGGGCga---UGGCCAGCa -3'
miRNA:   3'- cuuaCCGGCUCCGgcacgACCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 65271 0.72 0.428388
Target:  5'- aGGUGGCCGucauGGCCc-GCaggagGGCCAGCu -3'
miRNA:   3'- cUUACCGGCu---CCGGcaCGa----CCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 49197 0.72 0.428388
Target:  5'- --cUGGCCGAGGgCGaGCUGcGCCugguGCu -3'
miRNA:   3'- cuuACCGGCUCCgGCaCGAC-CGGu---CG- -5'
3595 5' -60.1 NC_001650.1 + 158257 0.72 0.428388
Target:  5'- ---gGGCUGGcGGCCGUGgaGGCCuggauGCc -3'
miRNA:   3'- cuuaCCGGCU-CCGGCACgaCCGGu----CG- -5'
3595 5' -60.1 NC_001650.1 + 60185 0.72 0.437071
Target:  5'- ---aGGCCGGGGUC-UGCgggcggcgGGUCAGCa -3'
miRNA:   3'- cuuaCCGGCUCCGGcACGa-------CCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.