miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3595 5' -60.1 NC_001650.1 + 182269 0.68 0.62694
Target:  5'- ---gGGCCGGuuguuGGCCGcucgGCUGGUUGGUg -3'
miRNA:   3'- cuuaCCGGCU-----CCGGCa---CGACCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 57543 0.71 0.472778
Target:  5'- ---cGGCUGGGGCUGggGCUgGGCCuGUg -3'
miRNA:   3'- cuuaCCGGCUCCGGCa-CGA-CCGGuCG- -5'
3595 5' -60.1 NC_001650.1 + 88834 0.71 0.472778
Target:  5'- cGGUGaaaCUGAGGCCgGUGCUGGCCGa- -3'
miRNA:   3'- cUUACc--GGCUCCGG-CACGACCGGUcg -5'
3595 5' -60.1 NC_001650.1 + 139609 0.7 0.519369
Target:  5'- ---aGGCCaGAGGuCCGUGCcgGGuCCAGa -3'
miRNA:   3'- cuuaCCGG-CUCC-GGCACGa-CC-GGUCg -5'
3595 5' -60.1 NC_001650.1 + 87342 0.7 0.519369
Target:  5'- aGggUGG-UGAGGCUGaccacgaaaUGCcucuUGGCCAGCa -3'
miRNA:   3'- -CuuACCgGCUCCGGC---------ACG----ACCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 37570 0.69 0.557897
Target:  5'- uGAUGGgggaCGAGGCgGUGCgggcggcGGCCgAGCg -3'
miRNA:   3'- cUUACCg---GCUCCGgCACGa------CCGG-UCG- -5'
3595 5' -60.1 NC_001650.1 + 23543 0.69 0.597194
Target:  5'- ---aGGCCGGGGCCaagaUGGCCauAGCc -3'
miRNA:   3'- cuuaCCGGCUCCGGcacgACCGG--UCG- -5'
3595 5' -60.1 NC_001650.1 + 49286 0.68 0.617012
Target:  5'- cGAGcuGCCcccGGGCCuggaGCUGGCCAGCg -3'
miRNA:   3'- -CUUacCGGc--UCCGGca--CGACCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 15562 0.68 0.62694
Target:  5'- ---gGGCCGGuuguuGGCCGcucgGCUGGUUGGUg -3'
miRNA:   3'- cuuaCCGGCU-----CCGGCa---CGACCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 131825 0.71 0.463711
Target:  5'- ---aGGCCGGGGCgGU---GGCCGGCc -3'
miRNA:   3'- cuuaCCGGCUCCGgCAcgaCCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 35284 0.71 0.445854
Target:  5'- gGGcgGGCCGGGGaCGgGCgcgGGCCAGg -3'
miRNA:   3'- -CUuaCCGGCUCCgGCaCGa--CCGGUCg -5'
3595 5' -60.1 NC_001650.1 + 60185 0.72 0.437071
Target:  5'- ---aGGCCGGGGUC-UGCgggcggcgGGUCAGCa -3'
miRNA:   3'- cuuaCCGGCUCCGGcACGa-------CCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 107985 0.79 0.168793
Target:  5'- cGggUGcaCCGAGGCCcaguucGUGCUGGUCAGCu -3'
miRNA:   3'- -CuuACc-GGCUCCGG------CACGACCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 64984 0.78 0.181657
Target:  5'- -uAUGGCCGuGGCCGgccuggaggacGCgGGCCAGCa -3'
miRNA:   3'- cuUACCGGCuCCGGCa----------CGaCCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 22333 0.75 0.26567
Target:  5'- ---cGGCUGGGGCaaCGUGCUGGgCCuGCa -3'
miRNA:   3'- cuuaCCGGCUCCG--GCACGACC-GGuCG- -5'
3595 5' -60.1 NC_001650.1 + 60285 0.75 0.297724
Target:  5'- ---cGGCUGAGGCC--GCUGGgCGGCg -3'
miRNA:   3'- cuuaCCGGCUCCGGcaCGACCgGUCG- -5'
3595 5' -60.1 NC_001650.1 + 82397 0.74 0.318356
Target:  5'- ---aGGCgGuGGCCGaGCUGGCCAaGCc -3'
miRNA:   3'- cuuaCCGgCuCCGGCaCGACCGGU-CG- -5'
3595 5' -60.1 NC_001650.1 + 83380 0.73 0.378518
Target:  5'- uGGcgGGCCGAGGCCcUGCcgucGGuaCCAGCu -3'
miRNA:   3'- -CUuaCCGGCUCCGGcACGa---CC--GGUCG- -5'
3595 5' -60.1 NC_001650.1 + 158257 0.72 0.428388
Target:  5'- ---gGGCUGGcGGCCGUGgaGGCCuggauGCc -3'
miRNA:   3'- cuuaCCGGCU-CCGGCACgaCCGGu----CG- -5'
3595 5' -60.1 NC_001650.1 + 49197 0.72 0.428388
Target:  5'- --cUGGCCGAGGgCGaGCUGcGCCugguGCu -3'
miRNA:   3'- cuuACCGGCUCCgGCaCGAC-CGGu---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.