miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 3' -68.1 NC_001650.1 + 48127 0.72 0.181125
Target:  5'- -aGGGGGUccaUGACCCCCGcGGCCaucUGCa -3'
miRNA:   3'- gcCCCCCG---ACUGGGGGCcCCGGc--ACG- -5'
3596 3' -68.1 NC_001650.1 + 155196 0.72 0.189537
Target:  5'- aGGGuggccGGGCUcagGACCucCCCGuGGGCUGUGCu -3'
miRNA:   3'- gCCC-----CCCGA---CUGG--GGGC-CCCGGCACG- -5'
3596 3' -68.1 NC_001650.1 + 28947 0.72 0.19829
Target:  5'- aGGGGGGagaucuUGGCCCCCGGGaagaGCUgcgagugguagGUGCu -3'
miRNA:   3'- gCCCCCCg-----ACUGGGGGCCC----CGG-----------CACG- -5'
3596 3' -68.1 NC_001650.1 + 77949 0.72 0.19829
Target:  5'- gGGGGcGGCUGcgagGCaCCgaGGGGCCGUcGCg -3'
miRNA:   3'- gCCCC-CCGAC----UG-GGggCCCCGGCA-CG- -5'
3596 3' -68.1 NC_001650.1 + 5640 0.72 0.202798
Target:  5'- uGGGcGGCccccuuaGACCCCCGGGGCUuaGUGg -3'
miRNA:   3'- gCCCcCCGa------CUGGGGGCCCCGG--CACg -5'
3596 3' -68.1 NC_001650.1 + 172347 0.72 0.202798
Target:  5'- uGGGcGGCccccuuaGACCCCCGGGGCUuaGUGg -3'
miRNA:   3'- gCCCcCCGa------CUGGGGGCCCCGG--CACg -5'
3596 3' -68.1 NC_001650.1 + 154985 0.71 0.207394
Target:  5'- aCGGGGaGGUccUGAgCCCggccacccuuCGGGGCaCGUGCu -3'
miRNA:   3'- -GCCCC-CCG--ACUgGGG----------GCCCCG-GCACG- -5'
3596 3' -68.1 NC_001650.1 + 60191 0.71 0.209257
Target:  5'- uCGGGGcccagaccgcccugcGGCUGACCCUggagCGGGGCCugaaccUGCu -3'
miRNA:   3'- -GCCCC---------------CCGACUGGGG----GCCCCGGc-----ACG- -5'
3596 3' -68.1 NC_001650.1 + 156433 0.71 0.216375
Target:  5'- aCGGGGGGCUGAUCgCCUgcugcgcggagauGGcccuGGCCGgGCa -3'
miRNA:   3'- -GCCCCCCGACUGG-GGG-------------CC----CCGGCaCG- -5'
3596 3' -68.1 NC_001650.1 + 115443 0.71 0.216856
Target:  5'- aGGGGGccucGCUGACCUuucugcagcggCCGGGcCUGUGCa -3'
miRNA:   3'- gCCCCC----CGACUGGG-----------GGCCCcGGCACG- -5'
3596 3' -68.1 NC_001650.1 + 141944 0.71 0.221725
Target:  5'- aGGGGGGCaaACCCCCucGGCCGcgucUGCc -3'
miRNA:   3'- gCCCCCCGacUGGGGGccCCGGC----ACG- -5'
3596 3' -68.1 NC_001650.1 + 31302 0.71 0.226686
Target:  5'- aCGGGGGcGCUucaugcGACCCCa-GGGaCGUGCu -3'
miRNA:   3'- -GCCCCC-CGA------CUGGGGgcCCCgGCACG- -5'
3596 3' -68.1 NC_001650.1 + 48254 0.7 0.240552
Target:  5'- aGGGGGGCUGcuuccaggcggcuaGCCCCCuagcccacaGGGCCaaGCu -3'
miRNA:   3'- gCCCCCCGAC--------------UGGGGGc--------CCCGGcaCG- -5'
3596 3' -68.1 NC_001650.1 + 71650 0.7 0.247478
Target:  5'- gGGGGGGCUG-CUcguacucgagCCCGuGGGCCuccaUGCg -3'
miRNA:   3'- gCCCCCCGACuGG----------GGGC-CCCGGc---ACG- -5'
3596 3' -68.1 NC_001650.1 + 130870 0.7 0.252916
Target:  5'- cCGGGGGGCUGgacaagagcGCCCCCGagacccacgagcGGGUCcUGg -3'
miRNA:   3'- -GCCCCCCGAC---------UGGGGGC------------CCCGGcACg -5'
3596 3' -68.1 NC_001650.1 + 155816 0.7 0.256227
Target:  5'- aCGGGGGcGCgcgccaacuacgcGGCCUCCagGGGGCUgGUGCa -3'
miRNA:   3'- -GCCCCC-CGa------------CUGGGGG--CCCCGG-CACG- -5'
3596 3' -68.1 NC_001650.1 + 134518 0.7 0.26352
Target:  5'- cCGGGGGGgaagacggguaguCUGGCCCUgGgGGGCCuGgcggGCg -3'
miRNA:   3'- -GCCCCCC-------------GACUGGGGgC-CCCGG-Ca---CG- -5'
3596 3' -68.1 NC_001650.1 + 48062 0.7 0.269823
Target:  5'- uGGGGGGC--GCCCUgaaCGuGGGCaUGUGCg -3'
miRNA:   3'- gCCCCCCGacUGGGG---GC-CCCG-GCACG- -5'
3596 3' -68.1 NC_001650.1 + 108579 0.69 0.281592
Target:  5'- uCGGGGGG--GACCCCgucgauguugUGGGGguUCGUGCg -3'
miRNA:   3'- -GCCCCCCgaCUGGGG----------GCCCC--GGCACG- -5'
3596 3' -68.1 NC_001650.1 + 23758 0.69 0.287628
Target:  5'- gCGGGGGGCggaGACCCgCCcgagGGGGgCGcUGa -3'
miRNA:   3'- -GCCCCCCGa--CUGGG-GG----CCCCgGC-ACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.