miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 3' -68.1 NC_001650.1 + 21632 1.1 0.000324
Target:  5'- aCGGGGGGCUGACCCCCGGGGCCGUGCu -3'
miRNA:   3'- -GCCCCCCGACUGGGGGCCCCGGCACG- -5'
3596 3' -68.1 NC_001650.1 + 175266 0.78 0.072081
Target:  5'- uGGGGGGUggcauucACCCCCGGGGUgGUGg -3'
miRNA:   3'- gCCCCCCGac-----UGGGGGCCCCGgCACg -5'
3596 3' -68.1 NC_001650.1 + 8559 0.78 0.072081
Target:  5'- uGGGGGGUggcauucACCCCCGGGGUgGUGg -3'
miRNA:   3'- gCCCCCCGac-----UGGGGGCCCCGgCACg -5'
3596 3' -68.1 NC_001650.1 + 59963 0.77 0.091757
Target:  5'- uGGGGGGCgccucGCCCCCgGGGGCCacggGCc -3'
miRNA:   3'- gCCCCCCGac---UGGGGG-CCCCGGca--CG- -5'
3596 3' -68.1 NC_001650.1 + 36496 0.76 0.096263
Target:  5'- cCGGGGGGCagGGCCaggCUGGGGCUGUacuGCg -3'
miRNA:   3'- -GCCCCCCGa-CUGGg--GGCCCCGGCA---CG- -5'
3596 3' -68.1 NC_001650.1 + 59742 0.76 0.103415
Target:  5'- uCGaGGGGCccgUGGCCCCCGGGGgCGagGCg -3'
miRNA:   3'- -GCcCCCCG---ACUGGGGGCCCCgGCa-CG- -5'
3596 3' -68.1 NC_001650.1 + 156016 0.76 0.106922
Target:  5'- gCGGGGaGCUGAcccucuacagguCCCCCGGgcggcgggugggggcGGCCGUGCu -3'
miRNA:   3'- -GCCCCcCGACU------------GGGGGCC---------------CCGGCACG- -5'
3596 3' -68.1 NC_001650.1 + 156363 0.75 0.111594
Target:  5'- gCGGGGcauccacccgcugcuGGUgcuguucucagaGACCCCCGGGGCgGUGCu -3'
miRNA:   3'- -GCCCC---------------CCGa-----------CUGGGGGCCCCGgCACG- -5'
3596 3' -68.1 NC_001650.1 + 37208 0.75 0.116457
Target:  5'- aGaGGGGG-UGACCCCCgaGGGGCUG-GCa -3'
miRNA:   3'- gC-CCCCCgACUGGGGG--CCCCGGCaCG- -5'
3596 3' -68.1 NC_001650.1 + 107540 0.75 0.122092
Target:  5'- --uGGGGCUG-CCCCCGGGGgucuCCGUGg -3'
miRNA:   3'- gccCCCCGACuGGGGGCCCC----GGCACg -5'
3596 3' -68.1 NC_001650.1 + 164878 0.74 0.137304
Target:  5'- gGGGGGGUUGAgcgccgcgguCCCaCCGGGaGCCcggGUGCc -3'
miRNA:   3'- gCCCCCCGACU----------GGG-GGCCC-CGG---CACG- -5'
3596 3' -68.1 NC_001650.1 + 52785 0.74 0.137304
Target:  5'- gCGGcGGcGGC-GGCCCUCGGGGCCcggGCg -3'
miRNA:   3'- -GCC-CC-CCGaCUGGGGGCCCCGGca-CG- -5'
3596 3' -68.1 NC_001650.1 + 18185 0.73 0.154239
Target:  5'- uGGGGGGCgcucuucuucACCCCCGGGG--GUGCc -3'
miRNA:   3'- gCCCCCCGac--------UGGGGGCCCCggCACG- -5'
3596 3' -68.1 NC_001650.1 + 127570 0.73 0.161529
Target:  5'- aGGGGGGC-GACCgCCCaGGGCCa--- -3'
miRNA:   3'- gCCCCCCGaCUGG-GGGcCCCGGcacg -5'
3596 3' -68.1 NC_001650.1 + 24145 0.73 0.164909
Target:  5'- aCGGGgaccccauGGGUUuucugacguccgaGACCCCCGGGGUCGcGCu -3'
miRNA:   3'- -GCCC--------CCCGA-------------CUGGGGGCCCCGGCaCG- -5'
3596 3' -68.1 NC_001650.1 + 157725 0.73 0.165289
Target:  5'- aGGGGGGUgucccgggagGACCUCCGGGaGCUG-GUg -3'
miRNA:   3'- gCCCCCCGa---------CUGGGGGCCC-CGGCaCG- -5'
3596 3' -68.1 NC_001650.1 + 81837 0.73 0.165289
Target:  5'- aCGGGGGaGCUGGCCCgCGcGGCgcgcgcccUGUGCg -3'
miRNA:   3'- -GCCCCC-CGACUGGGgGCcCCG--------GCACG- -5'
3596 3' -68.1 NC_001650.1 + 51129 0.72 0.177044
Target:  5'- aCGGGGcaGG-UGACCCCCuGGGUcaCGUGCa -3'
miRNA:   3'- -GCCCC--CCgACUGGGGGcCCCG--GCACG- -5'
3596 3' -68.1 NC_001650.1 + 181839 0.72 0.179892
Target:  5'- -cGGGGGCUcugcgguuacaucaGcACCCCCGuuGGGCCGUGg -3'
miRNA:   3'- gcCCCCCGA--------------C-UGGGGGC--CCCGGCACg -5'
3596 3' -68.1 NC_001650.1 + 15132 0.72 0.179892
Target:  5'- -cGGGGGCUcugcgguuacaucaGcACCCCCGuuGGGCCGUGg -3'
miRNA:   3'- gcCCCCCGA--------------C-UGGGGGC--CCCGGCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.