miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 3' -68.1 NC_001650.1 + 181625 0.68 0.32598
Target:  5'- aCGGGGGuGCUGuguaaccgcagaGCCCCCG-GGCgGaaaGCg -3'
miRNA:   3'- -GCCCCC-CGAC------------UGGGGGCcCCGgCa--CG- -5'
3596 3' -68.1 NC_001650.1 + 31302 0.71 0.226686
Target:  5'- aCGGGGGcGCUucaugcGACCCCa-GGGaCGUGCu -3'
miRNA:   3'- -GCCCCC-CGA------CUGGGGgcCCCgGCACG- -5'
3596 3' -68.1 NC_001650.1 + 48254 0.7 0.240552
Target:  5'- aGGGGGGCUGcuuccaggcggcuaGCCCCCuagcccacaGGGCCaaGCu -3'
miRNA:   3'- gCCCCCCGAC--------------UGGGGGc--------CCCGGcaCG- -5'
3596 3' -68.1 NC_001650.1 + 130870 0.7 0.252916
Target:  5'- cCGGGGGGCUGgacaagagcGCCCCCGagacccacgagcGGGUCcUGg -3'
miRNA:   3'- -GCCCCCCGAC---------UGGGGGC------------CCCGGcACg -5'
3596 3' -68.1 NC_001650.1 + 48062 0.7 0.269823
Target:  5'- uGGGGGGC--GCCCUgaaCGuGGGCaUGUGCg -3'
miRNA:   3'- gCCCCCCGacUGGGG---GC-CCCG-GCACG- -5'
3596 3' -68.1 NC_001650.1 + 23758 0.69 0.287628
Target:  5'- gCGGGGGGCggaGACCCgCCcgagGGGGgCGcUGa -3'
miRNA:   3'- -GCCCCCCGa--CUGGG-GG----CCCCgGC-ACg -5'
3596 3' -68.1 NC_001650.1 + 61217 0.69 0.287628
Target:  5'- gGGGGGGUugccUGACCCCCGcccguccccGGCCacGUGg -3'
miRNA:   3'- gCCCCCCG----ACUGGGGGCc--------CCGG--CACg -5'
3596 3' -68.1 NC_001650.1 + 68128 0.69 0.293765
Target:  5'- uGGGcgcGGucucGCUGuagacgcgagccACCagCCCGGGGCCGUGCa -3'
miRNA:   3'- gCCC---CC----CGAC------------UGG--GGGCCCCGGCACG- -5'
3596 3' -68.1 NC_001650.1 + 91035 0.68 0.32598
Target:  5'- aGGGGGG-UGACCgUCuugGGGGCgGUGg -3'
miRNA:   3'- gCCCCCCgACUGGgGG---CCCCGgCACg -5'
3596 3' -68.1 NC_001650.1 + 141944 0.71 0.221725
Target:  5'- aGGGGGGCaaACCCCCucGGCCGcgucUGCc -3'
miRNA:   3'- gCCCCCCGacUGGGGGccCCGGC----ACG- -5'
3596 3' -68.1 NC_001650.1 + 154985 0.71 0.207394
Target:  5'- aCGGGGaGGUccUGAgCCCggccacccuuCGGGGCaCGUGCu -3'
miRNA:   3'- -GCCCC-CCG--ACUgGGG----------GCCCCG-GCACG- -5'
3596 3' -68.1 NC_001650.1 + 172347 0.72 0.202798
Target:  5'- uGGGcGGCccccuuaGACCCCCGGGGCUuaGUGg -3'
miRNA:   3'- gCCCcCCGa------CUGGGGGCCCCGG--CACg -5'
3596 3' -68.1 NC_001650.1 + 59742 0.76 0.103415
Target:  5'- uCGaGGGGCccgUGGCCCCCGGGGgCGagGCg -3'
miRNA:   3'- -GCcCCCCG---ACUGGGGGCCCCgGCa-CG- -5'
3596 3' -68.1 NC_001650.1 + 37208 0.75 0.116457
Target:  5'- aGaGGGGG-UGACCCCCgaGGGGCUG-GCa -3'
miRNA:   3'- gC-CCCCCgACUGGGGG--CCCCGGCaCG- -5'
3596 3' -68.1 NC_001650.1 + 52785 0.74 0.137304
Target:  5'- gCGGcGGcGGC-GGCCCUCGGGGCCcggGCg -3'
miRNA:   3'- -GCC-CC-CCGaCUGGGGGCCCCGGca-CG- -5'
3596 3' -68.1 NC_001650.1 + 127570 0.73 0.161529
Target:  5'- aGGGGGGC-GACCgCCCaGGGCCa--- -3'
miRNA:   3'- gCCCCCCGaCUGG-GGGcCCCGGcacg -5'
3596 3' -68.1 NC_001650.1 + 24145 0.73 0.164909
Target:  5'- aCGGGgaccccauGGGUUuucugacguccgaGACCCCCGGGGUCGcGCu -3'
miRNA:   3'- -GCCC--------CCCGA-------------CUGGGGGCCCCGGCaCG- -5'
3596 3' -68.1 NC_001650.1 + 48127 0.72 0.181125
Target:  5'- -aGGGGGUccaUGACCCCCGcGGCCaucUGCa -3'
miRNA:   3'- gcCCCCCG---ACUGGGGGCcCCGGc--ACG- -5'
3596 3' -68.1 NC_001650.1 + 77949 0.72 0.19829
Target:  5'- gGGGGcGGCUGcgagGCaCCgaGGGGCCGUcGCg -3'
miRNA:   3'- gCCCC-CCGAC----UG-GGggCCCCGGCA-CG- -5'
3596 3' -68.1 NC_001650.1 + 5640 0.72 0.202798
Target:  5'- uGGGcGGCccccuuaGACCCCCGGGGCUuaGUGg -3'
miRNA:   3'- gCCCcCCGa------CUGGGGGCCCCGG--CACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.