miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 3' -68.1 NC_001650.1 + 2768 0.67 0.405753
Target:  5'- gGGucauGGGGgaGugCCCauaaaGGGCUGUGCg -3'
miRNA:   3'- gCC----CCCCgaCugGGGgc---CCCGGCACG- -5'
3596 3' -68.1 NC_001650.1 + 3137 0.67 0.408877
Target:  5'- gGGaGGGGCUGcuccauuaauggacaGCCCCCcuGGGCCa--- -3'
miRNA:   3'- gCC-CCCCGAC---------------UGGGGGc-CCCGGcacg -5'
3596 3' -68.1 NC_001650.1 + 5017 0.66 0.440923
Target:  5'- cCGGGGGGCcuccgugugucUGAuaggcggacggggguCCCuCCGGGGgUGgggGCu -3'
miRNA:   3'- -GCCCCCCG-----------ACU---------------GGG-GGCCCCgGCa--CG- -5'
3596 3' -68.1 NC_001650.1 + 5640 0.72 0.202798
Target:  5'- uGGGcGGCccccuuaGACCCCCGGGGCUuaGUGg -3'
miRNA:   3'- gCCCcCCGa------CUGGGGGCCCCGG--CACg -5'
3596 3' -68.1 NC_001650.1 + 8559 0.78 0.072081
Target:  5'- uGGGGGGUggcauucACCCCCGGGGUgGUGg -3'
miRNA:   3'- gCCCCCCGac-----UGGGGGCCCCGgCACg -5'
3596 3' -68.1 NC_001650.1 + 14918 0.68 0.33205
Target:  5'- aCGGGGGuGCUGauguaaccgcagaGCCCCCG-GGCgGaaaGCg -3'
miRNA:   3'- -GCCCCC-CGAC-------------UGGGGGCcCCGgCa--CG- -5'
3596 3' -68.1 NC_001650.1 + 15132 0.72 0.179892
Target:  5'- -cGGGGGCUcugcgguuacaucaGcACCCCCGuuGGGCCGUGg -3'
miRNA:   3'- gcCCCCCGA--------------C-UGGGGGC--CCCGGCACg -5'
3596 3' -68.1 NC_001650.1 + 16784 0.66 0.42472
Target:  5'- aGGGGgcuuccuuacaacauGGCUGACCCCCucaugcacacaGGGGUCu--- -3'
miRNA:   3'- gCCCC---------------CCGACUGGGGG-----------CCCCGGcacg -5'
3596 3' -68.1 NC_001650.1 + 17048 0.67 0.393408
Target:  5'- aGGGGGcuuccuaccaauaugGCUGACCCCCucuuaugcacaGGGGCUu--- -3'
miRNA:   3'- gCCCCC---------------CGACUGGGGG-----------CCCCGGcacg -5'
3596 3' -68.1 NC_001650.1 + 18185 0.73 0.154239
Target:  5'- uGGGGGGCgcucuucuucACCCCCGGGG--GUGCc -3'
miRNA:   3'- gCCCCCCGac--------UGGGGGCCCCggCACG- -5'
3596 3' -68.1 NC_001650.1 + 21522 0.68 0.353588
Target:  5'- gGGGGGGCU-ACUgCUGggaGGGCCGcgGCu -3'
miRNA:   3'- gCCCCCCGAcUGGgGGC---CCCGGCa-CG- -5'
3596 3' -68.1 NC_001650.1 + 21632 1.1 0.000324
Target:  5'- aCGGGGGGCUGACCCCCGGGGCCGUGCu -3'
miRNA:   3'- -GCCCCCCGACUGGGGGCCCCGGCACG- -5'
3596 3' -68.1 NC_001650.1 + 22030 0.66 0.445852
Target:  5'- gGGauGGGGgUGGucgccucccccUCCCCGGGGCCucgGCc -3'
miRNA:   3'- gCC--CCCCgACU-----------GGGGGCCCCGGca-CG- -5'
3596 3' -68.1 NC_001650.1 + 22671 0.66 0.470947
Target:  5'- gCGGccGGcGGCUGGCCUCCauccuGGcGGCCGUcCa -3'
miRNA:   3'- -GCC--CC-CCGACUGGGGG-----CC-CCGGCAcG- -5'
3596 3' -68.1 NC_001650.1 + 23758 0.69 0.287628
Target:  5'- gCGGGGGGCggaGACCCgCCcgagGGGGgCGcUGa -3'
miRNA:   3'- -GCCCCCCGa--CUGGG-GG----CCCCgGC-ACg -5'
3596 3' -68.1 NC_001650.1 + 24145 0.73 0.164909
Target:  5'- aCGGGgaccccauGGGUUuucugacguccgaGACCCCCGGGGUCGcGCu -3'
miRNA:   3'- -GCCC--------CCCGA-------------CUGGGGGCCCCGGCaCG- -5'
3596 3' -68.1 NC_001650.1 + 26551 0.66 0.429543
Target:  5'- gCGGGGGGCgagGuguucucgcuGCCCCugcucuCGGGGCUcacgGUGg -3'
miRNA:   3'- -GCCCCCCGa--C----------UGGGG------GCCCCGG----CACg -5'
3596 3' -68.1 NC_001650.1 + 28947 0.72 0.19829
Target:  5'- aGGGGGGagaucuUGGCCCCCGGGaagaGCUgcgagugguagGUGCu -3'
miRNA:   3'- gCCCCCCg-----ACUGGGGGCCC----CGG-----------CACG- -5'
3596 3' -68.1 NC_001650.1 + 31302 0.71 0.226686
Target:  5'- aCGGGGGcGCUucaugcGACCCCa-GGGaCGUGCu -3'
miRNA:   3'- -GCCCCC-CGA------CUGGGGgcCCCgGCACG- -5'
3596 3' -68.1 NC_001650.1 + 36496 0.76 0.096263
Target:  5'- cCGGGGGGCagGGCCaggCUGGGGCUGUacuGCg -3'
miRNA:   3'- -GCCCCCCGa-CUGGg--GGCCCCGGCA---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.