Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3597 | 3' | -55.3 | NC_001650.1 | + | 169980 | 0.68 | 0.841125 |
Target: 5'- ---gCCAaugGGAGGCCUcCGGGcccGGCGACg -3' miRNA: 3'- uagaGGUa--UUUCCGGA-GCCU---CCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 134093 | 0.68 | 0.841125 |
Target: 5'- gGUC-CCAggggcGGCCUCuaGAGGCGACc -3' miRNA: 3'- -UAGaGGUauuu-CCGGAGc-CUCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 62185 | 0.68 | 0.849209 |
Target: 5'- aGUCUUU----GGGCgaCGGGGGCGGCa -3' miRNA: 3'- -UAGAGGuauuUCCGgaGCCUCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 116214 | 0.68 | 0.849209 |
Target: 5'- cUCUUUAgGGAGGCCgUGGAGGUGGa -3' miRNA: 3'- uAGAGGUaUUUCCGGaGCCUCCGCUg -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 77929 | 0.68 | 0.849209 |
Target: 5'- gGUCUUCAaacaGGAGGag-CGGGGGCGGCu -3' miRNA: 3'- -UAGAGGUa---UUUCCggaGCCUCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 130312 | 0.68 | 0.849209 |
Target: 5'- gAUCUCCGccuuGGgCUUGGcGGGCGGCu -3' miRNA: 3'- -UAGAGGUauuuCCgGAGCC-UCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 121962 | 0.68 | 0.857095 |
Target: 5'- -gCUCCccgagcUGGAGGCCaugcugCGGGGGCGGg -3' miRNA: 3'- uaGAGGu-----AUUUCCGGa-----GCCUCCGCUg -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 1290 | 0.68 | 0.857095 |
Target: 5'- cAUCaagCCaAUGGGGGCC-CGGGGGUGGg -3' miRNA: 3'- -UAGa--GG-UAUUUCCGGaGCCUCCGCUg -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 167997 | 0.68 | 0.857095 |
Target: 5'- cAUCaagCCaAUGGGGGCC-CGGGGGUGGg -3' miRNA: 3'- -UAGa--GG-UAUUUCCGGaGCCUCCGCUg -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 129644 | 0.68 | 0.857095 |
Target: 5'- -aCUCCcu---GGCCUCcucguuGGGGGCGGCc -3' miRNA: 3'- uaGAGGuauuuCCGGAG------CCUCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 102463 | 0.67 | 0.886517 |
Target: 5'- --gUCCAgcagcAGGCCgcccaGGAGGUGGCg -3' miRNA: 3'- uagAGGUauu--UCCGGag---CCUCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 136086 | 0.67 | 0.893316 |
Target: 5'- ---gCCAUGAAGGC---GGGGGCGGCc -3' miRNA: 3'- uagaGGUAUUUCCGgagCCUCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 27474 | 0.67 | 0.893316 |
Target: 5'- --gUCCAgaagcAGGCCUCcaaccGGGGCGGCg -3' miRNA: 3'- uagAGGUauu--UCCGGAGc----CUCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 117348 | 0.67 | 0.893316 |
Target: 5'- -cCUCC-UAAAGuaCCaCGGGGGCGACg -3' miRNA: 3'- uaGAGGuAUUUCc-GGaGCCUCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 74751 | 0.67 | 0.899883 |
Target: 5'- -aCUCUA---GGGCCaCGGuGGCGGCc -3' miRNA: 3'- uaGAGGUauuUCCGGaGCCuCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 34288 | 0.67 | 0.899883 |
Target: 5'- uUCUCCcucuuugGGAGcauaGUCUCGGGGGUGAUa -3' miRNA: 3'- uAGAGGua-----UUUC----CGGAGCCUCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 130969 | 0.67 | 0.899883 |
Target: 5'- -aCUCCc-AGAGGCC-CGucuucGAGGCGGCg -3' miRNA: 3'- uaGAGGuaUUUCCGGaGC-----CUCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 156116 | 0.67 | 0.906215 |
Target: 5'- uUCUCCAgguucGGGGCCUgccugaaGGAGGCa-- -3' miRNA: 3'- uAGAGGUau---UUCCGGAg------CCUCCGcug -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 77920 | 0.67 | 0.91231 |
Target: 5'- cUCUCUAcagaAAAGGCCcCGccuauacaGAGGCGGCa -3' miRNA: 3'- uAGAGGUa---UUUCCGGaGC--------CUCCGCUG- -5' |
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3597 | 3' | -55.3 | NC_001650.1 | + | 128236 | 0.67 | 0.91231 |
Target: 5'- -cCUCCAccuucuGGGUCUCGGcGGUGAg -3' miRNA: 3'- uaGAGGUauu---UCCGGAGCCuCCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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