miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 5' -64.8 NC_001650.1 + 121491 0.71 0.300155
Target:  5'- gCCugCGCcGCUGCaGCCC-CaCCAGCAu -3'
miRNA:   3'- -GGugGCGuCGGCGcCGGGaG-GGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 164808 0.71 0.300155
Target:  5'- gCCGCCgGCGGCCGCGaGCagaCCcCCgCGGCAa -3'
miRNA:   3'- -GGUGG-CGUCGGCGC-CG---GGaGG-GUCGU- -5'
3597 5' -64.8 NC_001650.1 + 142343 0.71 0.306695
Target:  5'- uCCACCuucaugGCGGCCGCGGaCUUCCUggAGCu -3'
miRNA:   3'- -GGUGG------CGUCGGCGCCgGGAGGG--UCGu -5'
3597 5' -64.8 NC_001650.1 + 21959 0.71 0.306695
Target:  5'- gCGCCGCAGCUGUugcuGCCCccugaucaagugUUCCAGCAg -3'
miRNA:   3'- gGUGGCGUCGGCGc---CGGG------------AGGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 136075 0.71 0.309342
Target:  5'- gCC-CCGCGGCCgccaugaaggcggggGCGGCCUUgUCCAGCc -3'
miRNA:   3'- -GGuGGCGUCGG---------------CGCCGGGA-GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 109063 0.71 0.309342
Target:  5'- cCCACCcggugaccuggguggGCAGCUGCacGGCCCgcUCCCAcGCGc -3'
miRNA:   3'- -GGUGG---------------CGUCGGCG--CCGGG--AGGGU-CGU- -5'
3597 5' -64.8 NC_001650.1 + 59155 0.71 0.313344
Target:  5'- gCCGCCGCcGCCuccCGGgCCUCCCGcGCc -3'
miRNA:   3'- -GGUGGCGuCGGc--GCCgGGAGGGU-CGu -5'
3597 5' -64.8 NC_001650.1 + 115875 0.71 0.313344
Target:  5'- uUCACaGCGGCgacugGUGGCUCUCCCGGCu -3'
miRNA:   3'- -GGUGgCGUCGg----CGCCGGGAGGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 79265 0.7 0.318063
Target:  5'- aCGCCuCGGCCGCuauccucuccagagGGCUCUCCCGGgAg -3'
miRNA:   3'- gGUGGcGUCGGCG--------------CCGGGAGGGUCgU- -5'
3597 5' -64.8 NC_001650.1 + 58319 0.7 0.319421
Target:  5'- -aACCaGCAGCaacccuuCGCGGCCCaggcCCCGGCGg -3'
miRNA:   3'- ggUGG-CGUCG-------GCGCCGGGa---GGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 107031 0.7 0.333942
Target:  5'- gCACCGUccauggAGCgGgUGGCCgUCCCGGCGu -3'
miRNA:   3'- gGUGGCG------UCGgC-GCCGGgAGGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 71134 0.7 0.333942
Target:  5'- cCCGcCCGUAGCUGaCGGCCgUCaCCAGg- -3'
miRNA:   3'- -GGU-GGCGUCGGC-GCCGGgAG-GGUCgu -5'
3597 5' -64.8 NC_001650.1 + 8873 0.7 0.333942
Target:  5'- aCGCUGCcugggAGCgGCGcGCCCUCCCugAGUAa -3'
miRNA:   3'- gGUGGCG-----UCGgCGC-CGGGAGGG--UCGU- -5'
3597 5' -64.8 NC_001650.1 + 175580 0.7 0.333942
Target:  5'- aCGCUGCcugggAGCgGCGcGCCCUCCCugAGUAa -3'
miRNA:   3'- gGUGGCG-----UCGgCGC-CGGGAGGG--UCGU- -5'
3597 5' -64.8 NC_001650.1 + 84054 0.7 0.341025
Target:  5'- aCCACCGCGuCCaGCaGGCUCUCgaagCCAGCGa -3'
miRNA:   3'- -GGUGGCGUcGG-CG-CCGGGAG----GGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 80370 0.7 0.341025
Target:  5'- gCGCUGCccGGCCGCccucGCCCUCCCA-CAu -3'
miRNA:   3'- gGUGGCG--UCGGCGc---CGGGAGGGUcGU- -5'
3597 5' -64.8 NC_001650.1 + 58134 0.7 0.355515
Target:  5'- gCCGCCccCGGCCGCGcCCUUCCCcguGCAc -3'
miRNA:   3'- -GGUGGc-GUCGGCGCcGGGAGGGu--CGU- -5'
3597 5' -64.8 NC_001650.1 + 24413 0.7 0.362175
Target:  5'- uCCACCGCcGCUgaggcggaggacaGCGGCaCCU-CCAGCGc -3'
miRNA:   3'- -GGUGGCGuCGG-------------CGCCG-GGAgGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 45307 0.69 0.370433
Target:  5'- gCgGCCGCaAGCCGCaGCCCgCUCAGgGg -3'
miRNA:   3'- -GgUGGCG-UCGGCGcCGGGaGGGUCgU- -5'
3597 5' -64.8 NC_001650.1 + 142849 0.69 0.370433
Target:  5'- gCCGCaGCAGCCGCaGCCCccUCCgcCGGCc -3'
miRNA:   3'- -GGUGgCGUCGGCGcCGGG--AGG--GUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.