miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 3' -65.9 NC_001650.1 + 60327 0.69 0.361075
Target:  5'- gCGgACGCGgCCUCCGCGgGC-GGcGGGu -3'
miRNA:   3'- -GCaUGCGCgGGGGGCGCgCGaCC-CCC- -5'
3599 3' -65.9 NC_001650.1 + 30807 0.69 0.367665
Target:  5'- gCGcUGCGCgugcugaccgagaGCUCCCUgaGCGUGCUGGcGGGg -3'
miRNA:   3'- -GC-AUGCG-------------CGGGGGG--CGCGCGACC-CCC- -5'
3599 3' -65.9 NC_001650.1 + 111724 0.69 0.368402
Target:  5'- -cUugGCcUCCCCCGUGCGCgcggcgGcGGGGa -3'
miRNA:   3'- gcAugCGcGGGGGGCGCGCGa-----C-CCCC- -5'
3599 3' -65.9 NC_001650.1 + 120862 0.69 0.368402
Target:  5'- ----gGCGCUCUCCuacgcgGCgGCGCUGGGGGc -3'
miRNA:   3'- gcaugCGCGGGGGG------CG-CGCGACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 90191 0.69 0.368402
Target:  5'- ----gGCGCCCCCUgGCgGCGgUGGGGa -3'
miRNA:   3'- gcaugCGCGGGGGG-CG-CGCgACCCCc -5'
3599 3' -65.9 NC_001650.1 + 121281 0.69 0.375831
Target:  5'- --cGgGCGCCCCCCGCGcCGCggcguccccGGGcaGGg -3'
miRNA:   3'- gcaUgCGCGGGGGGCGC-GCGa--------CCC--CC- -5'
3599 3' -65.9 NC_001650.1 + 50638 0.69 0.38336
Target:  5'- --gAUGCGCCCCCUcgaggggccgguGCcCGCgGGGGGc -3'
miRNA:   3'- gcaUGCGCGGGGGG------------CGcGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 128250 0.69 0.390989
Target:  5'- -cUGCGCGCCUacgggCCCGUGCcCgaGGGGGu -3'
miRNA:   3'- gcAUGCGCGGG-----GGGCGCGcGa-CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 51042 0.69 0.406541
Target:  5'- --aGCuCGCCgCCCuCGCGCGCcGGGGc -3'
miRNA:   3'- gcaUGcGCGG-GGG-GCGCGCGaCCCCc -5'
3599 3' -65.9 NC_001650.1 + 141475 0.68 0.414461
Target:  5'- --cGCGCGCCCgCUCGC-CGCcGcGGGGc -3'
miRNA:   3'- gcaUGCGCGGG-GGGCGcGCGaC-CCCC- -5'
3599 3' -65.9 NC_001650.1 + 121051 0.68 0.414461
Target:  5'- gGUggACGaCGCCCUgcccggggacgCCGCgGCGCgGGGGGc -3'
miRNA:   3'- gCA--UGC-GCGGGG-----------GGCG-CGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 131459 0.68 0.414461
Target:  5'- --gGgGgGCCUCCUGCGCGUUGGGc- -3'
miRNA:   3'- gcaUgCgCGGGGGGCGCGCGACCCcc -5'
3599 3' -65.9 NC_001650.1 + 155781 0.68 0.422475
Target:  5'- aCGgcCGCcCCCaCCCGC-CGCccGGGGGa -3'
miRNA:   3'- -GCauGCGcGGG-GGGCGcGCGa-CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 69205 0.68 0.425707
Target:  5'- cCGUGCGCGUgcaaCUCgUGCGCGCgggcgcuggaggccGGGGGc -3'
miRNA:   3'- -GCAUGCGCG----GGGgGCGCGCGa-------------CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 136290 0.68 0.42814
Target:  5'- --gGC-CGCCCCcgccuucauggcggCCGCgGgGCUGGGGGa -3'
miRNA:   3'- gcaUGcGCGGGG--------------GGCG-CgCGACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 93242 0.68 0.430582
Target:  5'- --aACGCGCCCg-CGCGCGacaUGGaGGGg -3'
miRNA:   3'- gcaUGCGCGGGggGCGCGCg--ACC-CCC- -5'
3599 3' -65.9 NC_001650.1 + 109096 0.68 0.430582
Target:  5'- aCGUGCugaGCGUCCUggGCGUcCUGGGGGa -3'
miRNA:   3'- -GCAUG---CGCGGGGggCGCGcGACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 156428 0.68 0.437955
Target:  5'- --cACGUGCCCCgggCCGUGCaGCucgggcgugagccUGGGGGc -3'
miRNA:   3'- gcaUGCGCGGGG---GGCGCG-CG-------------ACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 23963 0.68 0.447064
Target:  5'- uCGgGCGggucucCGCCCCCCGCGCGCcGcGaGGa -3'
miRNA:   3'- -GCaUGC------GCGGGGGGCGCGCGaC-C-CCc -5'
3599 3' -65.9 NC_001650.1 + 110876 0.67 0.463892
Target:  5'- -cUACGgGCCCCuaucgccgccgCCGCgGCGacuggaUGGGGGg -3'
miRNA:   3'- gcAUGCgCGGGG-----------GGCG-CGCg-----ACCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.