miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 3' -65.9 NC_001650.1 + 22842 1.08 0.000685
Target:  5'- gCGUACGCGCCCCCCGCGCGCUGGGGGc -3'
miRNA:   3'- -GCAUGCGCGGGGGGCGCGCGACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 75532 0.8 0.076437
Target:  5'- aCGUGCGCGCCUcgUCCGCGgcCGCaGGGGGg -3'
miRNA:   3'- -GCAUGCGCGGG--GGGCGC--GCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 22629 0.79 0.082239
Target:  5'- ----aGCGCCCCCaGCGCGCgGGGGGc -3'
miRNA:   3'- gcaugCGCGGGGGgCGCGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 57618 0.76 0.149587
Target:  5'- cCGUGCGCGCCCgggCCGCagGgGgUGGGGGa -3'
miRNA:   3'- -GCAUGCGCGGGg--GGCG--CgCgACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 23739 0.75 0.153128
Target:  5'- -cUGCGCGUCCUCgCgGCGCGCgGGGGGc -3'
miRNA:   3'- gcAUGCGCGGGGG-G-CGCGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 108543 0.75 0.171994
Target:  5'- --gGCgGgGCCUCCCGcCGCgGCUGGGGGa -3'
miRNA:   3'- gcaUG-CgCGGGGGGC-GCG-CGACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 68167 0.74 0.176008
Target:  5'- aCGUGCGCGCCgUCCucagGCuCGCUaGGGGGg -3'
miRNA:   3'- -GCAUGCGCGGgGGG----CGcGCGA-CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 50972 0.74 0.184287
Target:  5'- aCGUGCGC-CUgCCCGUGUGCgagcugcgGGGGGa -3'
miRNA:   3'- -GCAUGCGcGGgGGGCGCGCGa-------CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 132970 0.74 0.201423
Target:  5'- gGUcCGCGCUCgCCCGCGCgggauagagacacGCUGGGaGGg -3'
miRNA:   3'- gCAuGCGCGGG-GGGCGCG-------------CGACCC-CC- -5'
3599 3' -65.9 NC_001650.1 + 35798 0.73 0.2065
Target:  5'- uCGUGCGCggcgGCCgUCCCGCGC-CaGGGGGg -3'
miRNA:   3'- -GCAUGCG----CGG-GGGGCGCGcGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 183882 0.73 0.216016
Target:  5'- gGUGgGaaGCCCCCUGUGCGCaugaGGGGGu -3'
miRNA:   3'- gCAUgCg-CGGGGGGCGCGCGa---CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 17175 0.73 0.216016
Target:  5'- gGUGgGaaGCCCCCUGUGCGCaugaGGGGGu -3'
miRNA:   3'- gCAUgCg-CGGGGGGCGCGCGa---CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 58163 0.72 0.252312
Target:  5'- cCGgcCGCGCCUCCCGCccaGCUGaGGGu -3'
miRNA:   3'- -GCauGCGCGGGGGGCGcg-CGAC-CCCc -5'
3599 3' -65.9 NC_001650.1 + 142613 0.72 0.256206
Target:  5'- --cACGCGCCCgCCGUcaagcagcaggccgGCGgaGGGGGc -3'
miRNA:   3'- gcaUGCGCGGGgGGCG--------------CGCgaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 100651 0.72 0.257889
Target:  5'- gGUACGCGCCgUCCGgGgGCcccUGGGaGGg -3'
miRNA:   3'- gCAUGCGCGGgGGGCgCgCG---ACCC-CC- -5'
3599 3' -65.9 NC_001650.1 + 29033 0.71 0.281208
Target:  5'- aGUACccgcaCGCCCUCgGgGCGCgGGGGGu -3'
miRNA:   3'- gCAUGc----GCGGGGGgCgCGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 132847 0.71 0.293481
Target:  5'- ---cCGCGgCCgCCGCgGCGaCUGGGGGa -3'
miRNA:   3'- gcauGCGCgGGgGGCG-CGC-GACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 51371 0.7 0.319272
Target:  5'- --cGCGCGCCgccugCCCCGCGgGCacuaugaccGGGGGc -3'
miRNA:   3'- gcaUGCGCGG-----GGGGCGCgCGa--------CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 132547 0.7 0.339708
Target:  5'- --cGCGCGCCCCCCGggcgaCGCGCccccGGuGGa -3'
miRNA:   3'- gcaUGCGCGGGGGGC-----GCGCGa---CC-CCc -5'
3599 3' -65.9 NC_001650.1 + 50829 0.69 0.361075
Target:  5'- ---cCGCGgCCCCgGCGCGCgaGGGcGGc -3'
miRNA:   3'- gcauGCGCgGGGGgCGCGCGa-CCC-CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.