miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 3' -65.9 NC_001650.1 + 17175 0.73 0.216016
Target:  5'- gGUGgGaaGCCCCCUGUGCGCaugaGGGGGu -3'
miRNA:   3'- gCAUgCg-CGGGGGGCGCGCGa---CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 18197 0.67 0.48018
Target:  5'- ----aGCGCCCCCaCGUgggggGCGCUcuucuucacccccGGGGGu -3'
miRNA:   3'- gcaugCGCGGGGG-GCG-----CGCGA-------------CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 21620 0.66 0.523397
Target:  5'- gGUGgGCGCCgucucugagcugCCCGCgGgGCUGGGGu -3'
miRNA:   3'- gCAUgCGCGGg-----------GGGCG-CgCGACCCCc -5'
3599 3' -65.9 NC_001650.1 + 22629 0.79 0.082239
Target:  5'- ----aGCGCCCCCaGCGCGCgGGGGGc -3'
miRNA:   3'- gcaugCGCGGGGGgCGCGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 22842 1.08 0.000685
Target:  5'- gCGUACGCGCCCCCCGCGCGCUGGGGGc -3'
miRNA:   3'- -GCAUGCGCGGGGGGCGCGCGACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 23739 0.75 0.153128
Target:  5'- -cUGCGCGUCCUCgCgGCGCGCgGGGGGc -3'
miRNA:   3'- gcAUGCGCGGGGG-G-CGCGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 23963 0.68 0.447064
Target:  5'- uCGgGCGggucucCGCCCCCCGCGCGCcGcGaGGa -3'
miRNA:   3'- -GCaUGC------GCGGGGGGCGCGCGaC-C-CCc -5'
3599 3' -65.9 NC_001650.1 + 24061 0.66 0.546931
Target:  5'- cCGaGCGCGCCUCCUucaggucgggggugaGCuuccaaaagGCGCaGGGGGu -3'
miRNA:   3'- -GCaUGCGCGGGGGG---------------CG---------CGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 26748 0.67 0.516233
Target:  5'- --cACcUGCCCCCCGCGUGgaGGuugcccaggaGGGa -3'
miRNA:   3'- gcaUGcGCGGGGGGCGCGCgaCC----------CCC- -5'
3599 3' -65.9 NC_001650.1 + 29033 0.71 0.281208
Target:  5'- aGUACccgcaCGCCCUCgGgGCGCgGGGGGu -3'
miRNA:   3'- gCAUGc----GCGGGGGgCgCGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 30807 0.69 0.367665
Target:  5'- gCGcUGCGCgugcugaccgagaGCUCCCUgaGCGUGCUGGcGGGg -3'
miRNA:   3'- -GC-AUGCG-------------CGGGGGG--CGCGCGACC-CCC- -5'
3599 3' -65.9 NC_001650.1 + 35381 0.67 0.516233
Target:  5'- gGUGCugGUGUggggcaccaCCCCCGCgGCGCcUGGGGu -3'
miRNA:   3'- gCAUG--CGCG---------GGGGGCG-CGCG-ACCCCc -5'
3599 3' -65.9 NC_001650.1 + 35798 0.73 0.2065
Target:  5'- uCGUGCGCggcgGCCgUCCCGCGC-CaGGGGGg -3'
miRNA:   3'- -GCAUGCG----CGG-GGGGCGCGcGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 36020 0.67 0.507333
Target:  5'- uGgcCGCGCCCCCCuG-GCGC-GGGa- -3'
miRNA:   3'- gCauGCGCGGGGGG-CgCGCGaCCCcc -5'
3599 3' -65.9 NC_001650.1 + 50638 0.69 0.38336
Target:  5'- --gAUGCGCCCCCUcgaggggccgguGCcCGCgGGGGGc -3'
miRNA:   3'- gcaUGCGCGGGGGG------------CGcGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 50829 0.69 0.361075
Target:  5'- ---cCGCGgCCCCgGCGCGCgaGGGcGGc -3'
miRNA:   3'- gcauGCGCgGGGGgCGCGCGa-CCC-CC- -5'
3599 3' -65.9 NC_001650.1 + 50972 0.74 0.184287
Target:  5'- aCGUGCGC-CUgCCCGUGUGCgagcugcgGGGGGa -3'
miRNA:   3'- -GCAUGCGcGGgGGGCGCGCGa-------CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 51042 0.69 0.406541
Target:  5'- --aGCuCGCCgCCCuCGCGCGCcGGGGc -3'
miRNA:   3'- gcaUGcGCGG-GGG-GCGCGCGaCCCCc -5'
3599 3' -65.9 NC_001650.1 + 51371 0.7 0.319272
Target:  5'- --cGCGCGCCgccugCCCCGCGgGCacuaugaccGGGGGc -3'
miRNA:   3'- gcaUGCGCGG-----GGGGCGCgCGa--------CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 53075 0.66 0.522499
Target:  5'- --aGCGCGCCCUCCugcuacgagaggagGCGCGCccgcucccaGGGcGGg -3'
miRNA:   3'- gcaUGCGCGGGGGG--------------CGCGCGa--------CCC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.