miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 3' -65.9 NC_001650.1 + 109096 0.68 0.430582
Target:  5'- aCGUGCugaGCGUCCUggGCGUcCUGGGGGa -3'
miRNA:   3'- -GCAUG---CGCGGGGggCGCGcGACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 120862 0.69 0.368402
Target:  5'- ----gGCGCUCUCCuacgcgGCgGCGCUGGGGGc -3'
miRNA:   3'- gcaugCGCGGGGGG------CG-CGCGACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 90191 0.69 0.368402
Target:  5'- ----gGCGCCCCCUgGCgGCGgUGGGGa -3'
miRNA:   3'- gcaugCGCGGGGGG-CG-CGCgACCCCc -5'
3599 3' -65.9 NC_001650.1 + 50638 0.69 0.38336
Target:  5'- --gAUGCGCCCCCUcgaggggccgguGCcCGCgGGGGGc -3'
miRNA:   3'- gcaUGCGCGGGGGG------------CGcGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 128250 0.69 0.390989
Target:  5'- -cUGCGCGCCUacgggCCCGUGCcCgaGGGGGu -3'
miRNA:   3'- gcAUGCGCGGG-----GGGCGCGcGa-CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 121051 0.68 0.414461
Target:  5'- gGUggACGaCGCCCUgcccggggacgCCGCgGCGCgGGGGGc -3'
miRNA:   3'- gCA--UGC-GCGGGG-----------GGCG-CGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 155781 0.68 0.422475
Target:  5'- aCGgcCGCcCCCaCCCGC-CGCccGGGGGa -3'
miRNA:   3'- -GCauGCGcGGG-GGGCGcGCGa-CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 69205 0.68 0.425707
Target:  5'- cCGUGCGCGUgcaaCUCgUGCGCGCgggcgcuggaggccGGGGGc -3'
miRNA:   3'- -GCAUGCGCG----GGGgGCGCGCGa-------------CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 93242 0.68 0.430582
Target:  5'- --aACGCGCCCg-CGCGCGacaUGGaGGGg -3'
miRNA:   3'- gcaUGCGCGGGggGCGCGCg--ACC-CCC- -5'
3599 3' -65.9 NC_001650.1 + 30807 0.69 0.367665
Target:  5'- gCGcUGCGCgugcugaccgagaGCUCCCUgaGCGUGCUGGcGGGg -3'
miRNA:   3'- -GC-AUGCG-------------CGGGGGG--CGCGCGACC-CCC- -5'
3599 3' -65.9 NC_001650.1 + 50829 0.69 0.361075
Target:  5'- ---cCGCGgCCCCgGCGCGCgaGGGcGGc -3'
miRNA:   3'- gcauGCGCgGGGGgCGCGCGa-CCC-CC- -5'
3599 3' -65.9 NC_001650.1 + 132547 0.7 0.339708
Target:  5'- --cGCGCGCCCCCCGggcgaCGCGCccccGGuGGa -3'
miRNA:   3'- gcaUGCGCGGGGGGC-----GCGCGa---CC-CCc -5'
3599 3' -65.9 NC_001650.1 + 23739 0.75 0.153128
Target:  5'- -cUGCGCGUCCUCgCgGCGCGCgGGGGGc -3'
miRNA:   3'- gcAUGCGCGGGGG-G-CGCGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 108543 0.75 0.171994
Target:  5'- --gGCgGgGCCUCCCGcCGCgGCUGGGGGa -3'
miRNA:   3'- gcaUG-CgCGGGGGGC-GCG-CGACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 50972 0.74 0.184287
Target:  5'- aCGUGCGC-CUgCCCGUGUGCgagcugcgGGGGGa -3'
miRNA:   3'- -GCAUGCGcGGgGGGCGCGCGa-------CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 132970 0.74 0.201423
Target:  5'- gGUcCGCGCUCgCCCGCGCgggauagagacacGCUGGGaGGg -3'
miRNA:   3'- gCAuGCGCGGG-GGGCGCG-------------CGACCC-CC- -5'
3599 3' -65.9 NC_001650.1 + 35798 0.73 0.2065
Target:  5'- uCGUGCGCggcgGCCgUCCCGCGC-CaGGGGGg -3'
miRNA:   3'- -GCAUGCG----CGG-GGGGCGCGcGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 142613 0.72 0.256206
Target:  5'- --cACGCGCCCgCCGUcaagcagcaggccgGCGgaGGGGGc -3'
miRNA:   3'- gcaUGCGCGGGgGGCG--------------CGCgaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 29033 0.71 0.281208
Target:  5'- aGUACccgcaCGCCCUCgGgGCGCgGGGGGu -3'
miRNA:   3'- gCAUGc----GCGGGGGgCgCGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 132847 0.71 0.293481
Target:  5'- ---cCGCGgCCgCCGCgGCGaCUGGGGGa -3'
miRNA:   3'- gcauGCGCgGGgGGCG-CGC-GACCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.