Results 21 - 40 of 154 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 132378 | 0.73 | 0.774908 |
Target: 5'- uGUCGCCCucggccgagcucuuuGACGgccuGGCCG-GGCGCg -3' miRNA: 3'- -CAGCGGG---------------UUGUauuuCUGGCuCCGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 127424 | 0.73 | 0.774908 |
Target: 5'- uGUCGgUCAGCAUGuccuccgccgcccggGAGACCGGGGC-Cg -3' miRNA: 3'- -CAGCgGGUUGUAU---------------UUCUGGCUCCGcG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 11223 | 0.73 | 0.780543 |
Target: 5'- -cCGCCU---GUAAGGACCGAGGCu- -3' miRNA: 3'- caGCGGGuugUAUUUCUGGCUCCGcg -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 177930 | 0.73 | 0.780543 |
Target: 5'- -cCGCCU---GUAAGGACCGAGGCu- -3' miRNA: 3'- caGCGGGuugUAUUUCUGGCUCCGcg -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 94827 | 0.72 | 0.807945 |
Target: 5'- -cCGCCCGAagcgAGAGACCGccaGGGCGa -3' miRNA: 3'- caGCGGGUUgua-UUUCUGGC---UCCGCg -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 83516 | 0.72 | 0.807945 |
Target: 5'- -gCGCCCGAUaggugggagagGUGcAGGCaCGGGGCGCc -3' miRNA: 3'- caGCGGGUUG-----------UAUuUCUG-GCUCCGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 121304 | 0.72 | 0.807945 |
Target: 5'- -cCGCCCGAgAUAGAGGgCGuGcGCGCc -3' miRNA: 3'- caGCGGGUUgUAUUUCUgGCuC-CGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 30552 | 0.72 | 0.816765 |
Target: 5'- aUCGUUCAACAgagaaagAGAGACCGucuucucGGCGCc -3' miRNA: 3'- cAGCGGGUUGUa------UUUCUGGCu------CCGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 148169 | 0.72 | 0.816765 |
Target: 5'- cGUCGCgCGuACA---GGGCuCGAGGCGCu -3' miRNA: 3'- -CAGCGgGU-UGUauuUCUG-GCUCCGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 50980 | 0.72 | 0.825415 |
Target: 5'- -cUGCCCGugugcgagcuGCGgGGGGACgGGGGCGCg -3' miRNA: 3'- caGCGGGU----------UGUaUUUCUGgCUCCGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 132978 | 0.72 | 0.825415 |
Target: 5'- cUCGCCCGcgcgGgAUAGAGACacgcugggagGGGGCGCg -3' miRNA: 3'- cAGCGGGU----UgUAUUUCUGg---------CUCCGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 155261 | 0.72 | 0.825415 |
Target: 5'- -aCGCCCAGCAgggGAGGAuguuacCCGccAGGUGCc -3' miRNA: 3'- caGCGGGUUGUa--UUUCU------GGC--UCCGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 51012 | 0.72 | 0.833885 |
Target: 5'- -gUGCCCGAgAaGAAGACCuGGGGCuGCu -3' miRNA: 3'- caGCGGGUUgUaUUUCUGG-CUCCG-CG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 172963 | 0.72 | 0.833885 |
Target: 5'- --gGCCCAAU--GGGGACCGAGGgGg -3' miRNA: 3'- cagCGGGUUGuaUUUCUGGCUCCgCg -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 6256 | 0.72 | 0.833885 |
Target: 5'- --gGCCCAAU--GGGGACCGAGGgGg -3' miRNA: 3'- cagCGGGUUGuaUUUCUGGCUCCgCg -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 57482 | 0.72 | 0.842168 |
Target: 5'- --aGCCCGAgGgaggGGAGGCaugCGGGGCGCa -3' miRNA: 3'- cagCGGGUUgUa---UUUCUG---GCUCCGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 114735 | 0.71 | 0.858144 |
Target: 5'- gGUC-CCCAgauACAuuUAAGGAaaucCCGGGGCGCu -3' miRNA: 3'- -CAGcGGGU---UGU--AUUUCU----GGCUCCGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 46504 | 0.71 | 0.865822 |
Target: 5'- cUC-CCCGGCGUcgGGGCCGgcggcgaccGGGCGCc -3' miRNA: 3'- cAGcGGGUUGUAuuUCUGGC---------UCCGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 129869 | 0.71 | 0.865822 |
Target: 5'- --aGCUCAACcgGcAGGCCGAGGcCGUg -3' miRNA: 3'- cagCGGGUUGuaUuUCUGGCUCC-GCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 85011 | 0.71 | 0.865822 |
Target: 5'- cGUCGgaCCCGACAUAc---CCGAGGUGUa -3' miRNA: 3'- -CAGC--GGGUUGUAUuucuGGCUCCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home