miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3601 5' -56.5 NC_001650.1 + 301 0.72 0.625505
Target:  5'- aGGGUUGGGAGGGccccgagGGGGGgUUUCCCg -3'
miRNA:   3'- gCCCAGUCCUCCCa------UUUCUgGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 138366 0.72 0.625505
Target:  5'- aGGGccgccuUCAGcAGGGUAAAGACCUUCUUu -3'
miRNA:   3'- gCCC------AGUCcUCCCAUUUCUGGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 24675 0.72 0.625505
Target:  5'- gCGGuUCAGGAuccugaaggGGGUguaggcgagGAAGGCCUCCCUc -3'
miRNA:   3'- -GCCcAGUCCU---------CCCA---------UUUCUGGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 6280 0.72 0.63548
Target:  5'- uGGG-CAGaGGGGGUAGuGGGCaaCUCCCCc -3'
miRNA:   3'- gCCCaGUC-CUCCCAUU-UCUG--GAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 172987 0.72 0.63548
Target:  5'- uGGG-CAGaGGGGGUAGuGGGCaaCUCCCCc -3'
miRNA:   3'- gCCCaGUC-CUCCCAUU-UCUG--GAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 49876 0.72 0.645451
Target:  5'- uGGGUgGGGgcguagAGGGgcAAGGCCcacCCCCa -3'
miRNA:   3'- gCCCAgUCC------UCCCauUUCUGGa--GGGG- -5'
3601 5' -56.5 NC_001650.1 + 90518 0.72 0.645451
Target:  5'- aGGuGUUcaAGGAGaGGUgccugGAGGGCUUCCCCa -3'
miRNA:   3'- gCC-CAG--UCCUC-CCA-----UUUCUGGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 79117 0.72 0.655413
Target:  5'- gCGGG-CGGGAGG---AGGGCCagUCCCCu -3'
miRNA:   3'- -GCCCaGUCCUCCcauUUCUGG--AGGGG- -5'
3601 5' -56.5 NC_001650.1 + 171307 0.72 0.665356
Target:  5'- aCGGGgu-GGAGGGUcccGAGGACgauugCCCCa -3'
miRNA:   3'- -GCCCaguCCUCCCA---UUUCUGga---GGGG- -5'
3601 5' -56.5 NC_001650.1 + 4600 0.72 0.665356
Target:  5'- aCGGGgu-GGAGGGUcccGAGGACgauugCCCCa -3'
miRNA:   3'- -GCCCaguCCUCCCA---UUUCUGga---GGGG- -5'
3601 5' -56.5 NC_001650.1 + 47495 0.71 0.68516
Target:  5'- gGGGUCucugacacGGuGGGGGUuugGGGGACC-CCCCu -3'
miRNA:   3'- gCCCAG--------UC-CUCCCA---UUUCUGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 121194 0.71 0.68516
Target:  5'- aCGGGUgCGcccggcGGAcGGUGGAGGCCUUCCUg -3'
miRNA:   3'- -GCCCA-GU------CCUcCCAUUUCUGGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 108492 0.71 0.68516
Target:  5'- gGGGUCccucuaccuGGAcgGGGUGGAGGgguaCUCCCCa -3'
miRNA:   3'- gCCCAGu--------CCU--CCCAUUUCUg---GAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 141903 0.71 0.68516
Target:  5'- gGGuGUUGGGGGGGUGAggaGGACCgCCgCa -3'
miRNA:   3'- gCC-CAGUCCUCCCAUU---UCUGGaGGgG- -5'
3601 5' -56.5 NC_001650.1 + 80933 0.71 0.71356
Target:  5'- aGGGUgcaCAGGcaGGuGGUGGAGACgccgucgCUCCCCg -3'
miRNA:   3'- gCCCA---GUCC--UC-CCAUUUCUG-------GAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 15059 0.71 0.714531
Target:  5'- gCGGGcCgcuGGGGGGGaAGGGACggCCCCg -3'
miRNA:   3'- -GCCCaG---UCCUCCCaUUUCUGgaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 29243 0.71 0.714531
Target:  5'- uCGGGUacuucauaggCAGGGGGGUGgacAAGAaCCUgaUCCCg -3'
miRNA:   3'- -GCCCA----------GUCCUCCCAU---UUCU-GGA--GGGG- -5'
3601 5' -56.5 NC_001650.1 + 181766 0.71 0.714531
Target:  5'- gCGGGcCgcuGGGGGGGaAGGGACggCCCCg -3'
miRNA:   3'- -GCCCaG---UCCUCCCaUUUCUGgaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 106861 0.71 0.714531
Target:  5'- gGGGUCGGGcccGGGGUGGAuGACaggucuaucaUCUCCa -3'
miRNA:   3'- gCCCAGUCC---UCCCAUUU-CUGg---------AGGGG- -5'
3601 5' -56.5 NC_001650.1 + 135882 0.71 0.724199
Target:  5'- uCGuGGUCGGaGAGGG---GGGCCUCugCCCg -3'
miRNA:   3'- -GC-CCAGUC-CUCCCauuUCUGGAG--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.