miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3601 5' -56.5 NC_001650.1 + 23874 1.11 0.002659
Target:  5'- cCGGGUCAGGAGGGUAAAGACCUCCCCc -3'
miRNA:   3'- -GCCCAGUCCUCCCAUUUCUGGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 129876 0.82 0.198352
Target:  5'- aGGGUCgAGGAcaGGGUGGAGcCCUCCCUc -3'
miRNA:   3'- gCCCAG-UCCU--CCCAUUUCuGGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 157731 0.79 0.308623
Target:  5'- aGGGgCAGGGGGGUgucccggGAGGACCUCCg- -3'
miRNA:   3'- gCCCaGUCCUCCCA-------UUUCUGGAGGgg -5'
3601 5' -56.5 NC_001650.1 + 132084 0.79 0.309316
Target:  5'- gGGaGUCAGGAGGGgagccGGGGACC-CCCUa -3'
miRNA:   3'- gCC-CAGUCCUCCCa----UUUCUGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 56669 0.77 0.400929
Target:  5'- gGGGUCAGcGAGGGgcGAGGCagagCCUCu -3'
miRNA:   3'- gCCCAGUC-CUCCCauUUCUGga--GGGG- -5'
3601 5' -56.5 NC_001650.1 + 37243 0.76 0.417791
Target:  5'- uGGG-CAGGcGGGUGGAGugCgCCCCc -3'
miRNA:   3'- gCCCaGUCCuCCCAUUUCugGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 122277 0.76 0.426383
Target:  5'- aGGGUCAGGGGGcGccUGAuguGGGCCagCCCCg -3'
miRNA:   3'- gCCCAGUCCUCC-C--AUU---UCUGGa-GGGG- -5'
3601 5' -56.5 NC_001650.1 + 83578 0.76 0.435079
Target:  5'- gGGGgaguaCGGGAGGGUGGAGGCggUCUCCa -3'
miRNA:   3'- gCCCa----GUCCUCCCAUUUCUGg-AGGGG- -5'
3601 5' -56.5 NC_001650.1 + 181589 0.76 0.435079
Target:  5'- cCGGGUCcgcgAGGAGGGggggagAGAGGCCggccgCCCg -3'
miRNA:   3'- -GCCCAG----UCCUCCCa-----UUUCUGGa----GGGg -5'
3601 5' -56.5 NC_001650.1 + 14882 0.76 0.435079
Target:  5'- cCGGGUCcgcgAGGAGGGggggagAGAGGCCggccgCCCg -3'
miRNA:   3'- -GCCCAG----UCCUCCCa-----UUUCUGGa----GGGg -5'
3601 5' -56.5 NC_001650.1 + 30680 0.75 0.461765
Target:  5'- gCGGG-CGGGAuGGgcGAGACC-CCCCu -3'
miRNA:   3'- -GCCCaGUCCUcCCauUUCUGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 171384 0.75 0.48929
Target:  5'- gGGGUCcGGGGGGUcuuAAAGACC-CUCUa -3'
miRNA:   3'- gCCCAGuCCUCCCA---UUUCUGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 4677 0.75 0.48929
Target:  5'- gGGGUCcGGGGGGUcuuAAAGACC-CUCUa -3'
miRNA:   3'- gCCCAGuCCUCCCA---UUUCUGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 145370 0.74 0.546454
Target:  5'- aCGGGgguugCAGGAGGGgaaAGGGAgUUaCCCCg -3'
miRNA:   3'- -GCCCa----GUCCUCCCa--UUUCUgGA-GGGG- -5'
3601 5' -56.5 NC_001650.1 + 119543 0.74 0.546454
Target:  5'- cCGGGUCgcccgaGGGGGGGUAGGGGCaggUCUCg -3'
miRNA:   3'- -GCCCAG------UCCUCCCAUUUCUGga-GGGG- -5'
3601 5' -56.5 NC_001650.1 + 102770 0.74 0.546454
Target:  5'- aGGGggAGGAGGcGgcgccGGCCUCCCCu -3'
miRNA:   3'- gCCCagUCCUCC-Cauuu-CUGGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 57608 0.73 0.585728
Target:  5'- cCGGGccgCAGG-GGGUGGGGgaGCCgcaggCCCCa -3'
miRNA:   3'- -GCCCa--GUCCuCCCAUUUC--UGGa----GGGG- -5'
3601 5' -56.5 NC_001650.1 + 108715 0.73 0.595641
Target:  5'- gGGGUCGcGGGGGGcgucAAAGACagccucuUCCCCg -3'
miRNA:   3'- gCCCAGU-CCUCCCa---UUUCUGg------AGGGG- -5'
3601 5' -56.5 NC_001650.1 + 136103 0.73 0.605579
Target:  5'- aGGGagGGGcGGGcAGAGGCC-CCCCu -3'
miRNA:   3'- gCCCagUCCuCCCaUUUCUGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 167008 0.72 0.625505
Target:  5'- aGGGUUGGGAGGGccccgagGGGGGgUUUCCCg -3'
miRNA:   3'- gCCCAGUCCUCCCa------UUUCUgGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.