miRNA display CGI


Results 1 - 20 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3601 5' -56.5 NC_001650.1 + 301 0.72 0.625505
Target:  5'- aGGGUUGGGAGGGccccgagGGGGGgUUUCCCg -3'
miRNA:   3'- gCCCAGUCCUCCCa------UUUCUgGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 879 0.68 0.870269
Target:  5'- gGGGUUuGGGGGaGUGAGGucACCcgUCUCCg -3'
miRNA:   3'- gCCCAGuCCUCC-CAUUUC--UGG--AGGGG- -5'
3601 5' -56.5 NC_001650.1 + 2767 0.67 0.896696
Target:  5'- gGGGUCAuGGGGGaGUGcccauaaAGGGCUgugcgacgCCCCc -3'
miRNA:   3'- gCCCAGU-CCUCC-CAU-------UUCUGGa-------GGGG- -5'
3601 5' -56.5 NC_001650.1 + 4600 0.72 0.665356
Target:  5'- aCGGGgu-GGAGGGUcccGAGGACgauugCCCCa -3'
miRNA:   3'- -GCCCaguCCUCCCA---UUUCUGga---GGGG- -5'
3601 5' -56.5 NC_001650.1 + 4677 0.75 0.48929
Target:  5'- gGGGUCcGGGGGGUcuuAAAGACC-CUCUa -3'
miRNA:   3'- gCCCAGuCCUCCCA---UUUCUGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 4793 0.66 0.920896
Target:  5'- cCGGGgCucGAGGGgu-AGGCCUCCg- -3'
miRNA:   3'- -GCCCaGucCUCCCauuUCUGGAGGgg -5'
3601 5' -56.5 NC_001650.1 + 4898 0.69 0.823718
Target:  5'- aGGGUgGuccuaGAGGGUcuuuAAGACC-CCCCg -3'
miRNA:   3'- gCCCAgUc----CUCCCAu---UUCUGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 4990 0.66 0.926224
Target:  5'- uGGGUCuuggguaauaguGGGuGGGcuccgGGGGGCCUCCg- -3'
miRNA:   3'- gCCCAG------------UCCuCCCa----UUUCUGGAGGgg -5'
3601 5' -56.5 NC_001650.1 + 5050 0.66 0.926224
Target:  5'- gGGGUCccuccGGGGGUGGGGGCUUCgUUa -3'
miRNA:   3'- gCCCAGuc---CUCCCAUUUCUGGAGgGG- -5'
3601 5' -56.5 NC_001650.1 + 6280 0.72 0.63548
Target:  5'- uGGG-CAGaGGGGGUAGuGGGCaaCUCCCCc -3'
miRNA:   3'- gCCCaGUC-CUCCCAUU-UCUG--GAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 12326 0.71 0.724199
Target:  5'- uGGGUgugugcCAGGGGGGUuugggguGGGGCCaUCCUCc -3'
miRNA:   3'- gCCCA------GUCCUCCCAu------UUCUGG-AGGGG- -5'
3601 5' -56.5 NC_001650.1 + 12732 0.69 0.806805
Target:  5'- aGGGUUAGGgcuagaguuGGGGcUAGGG-UCUCCCUg -3'
miRNA:   3'- gCCCAGUCC---------UCCC-AUUUCuGGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 14123 0.69 0.83193
Target:  5'- gGGGUcCAGGGGGGc----GCCUCUCUc -3'
miRNA:   3'- gCCCA-GUCCUCCCauuucUGGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 14635 0.67 0.897331
Target:  5'- gGGGUCcaAGGGGGGUAGAGGUCUa--- -3'
miRNA:   3'- gCCCAG--UCCUCCCAUUUCUGGAgggg -5'
3601 5' -56.5 NC_001650.1 + 14882 0.76 0.435079
Target:  5'- cCGGGUCcgcgAGGAGGGggggagAGAGGCCggccgCCCg -3'
miRNA:   3'- -GCCCAG----UCCUCCCa-----UUUCUGGa----GGGg -5'
3601 5' -56.5 NC_001650.1 + 15059 0.71 0.714531
Target:  5'- gCGGGcCgcuGGGGGGGaAGGGACggCCCCg -3'
miRNA:   3'- -GCCCaG---UCCUCCCaUUUCUGgaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 15197 0.68 0.847829
Target:  5'- gGGGUCGcG-GGGUuGAGGCCgcagcgggcUCCCCc -3'
miRNA:   3'- gCCCAGUcCuCCCAuUUCUGG---------AGGGG- -5'
3601 5' -56.5 NC_001650.1 + 15297 0.67 0.876652
Target:  5'- cCGGGUCuguaaagAGGaAGcGGgcGGGGCCgUCCCUu -3'
miRNA:   3'- -GCCCAG-------UCC-UC-CCauUUCUGG-AGGGG- -5'
3601 5' -56.5 NC_001650.1 + 16105 0.67 0.903557
Target:  5'- uGGGUUGGGGGuacuGGccAGAGAuggUCUCCCCu -3'
miRNA:   3'- gCCCAGUCCUC----CCa-UUUCU---GGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 16505 0.67 0.890885
Target:  5'- aGGGUCAGccauuuuaGuGGGU--GGACCcuaaCCCCa -3'
miRNA:   3'- gCCCAGUC--------CuCCCAuuUCUGGa---GGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.