miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3601 5' -56.5 NC_001650.1 + 75246 0.7 0.780329
Target:  5'- aGGGaCGGGcugAGGGUGGAGACCUaCUa -3'
miRNA:   3'- gCCCaGUCC---UCCCAUUUCUGGAgGGg -5'
3601 5' -56.5 NC_001650.1 + 47495 0.71 0.68516
Target:  5'- gGGGUCucugacacGGuGGGGGUuugGGGGACC-CCCCu -3'
miRNA:   3'- gCCCAG--------UC-CUCCCA---UUUCUGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 121194 0.71 0.68516
Target:  5'- aCGGGUgCGcccggcGGAcGGUGGAGGCCUUCCUg -3'
miRNA:   3'- -GCCCA-GU------CCUcCCAUUUCUGGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 15059 0.71 0.714531
Target:  5'- gCGGGcCgcuGGGGGGGaAGGGACggCCCCg -3'
miRNA:   3'- -GCCCaG---UCCUCCCaUUUCUGgaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 29243 0.71 0.714531
Target:  5'- uCGGGUacuucauaggCAGGGGGGUGgacAAGAaCCUgaUCCCg -3'
miRNA:   3'- -GCCCA----------GUCCUCCCAU---UUCU-GGA--GGGG- -5'
3601 5' -56.5 NC_001650.1 + 106861 0.71 0.714531
Target:  5'- gGGGUCGGGcccGGGGUGGAuGACaggucuaucaUCUCCa -3'
miRNA:   3'- gCCCAGUCC---UCCCAUUU-CUGg---------AGGGG- -5'
3601 5' -56.5 NC_001650.1 + 181766 0.71 0.714531
Target:  5'- gCGGGcCgcuGGGGGGGaAGGGACggCCCCg -3'
miRNA:   3'- -GCCCaG---UCCUCCCaUUUCUGgaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 135882 0.71 0.724199
Target:  5'- uCGuGGUCGGaGAGGG---GGGCCUCugCCCg -3'
miRNA:   3'- -GC-CCAGUC-CUCCCauuUCUGGAG--GGG- -5'
3601 5' -56.5 NC_001650.1 + 37620 0.7 0.762034
Target:  5'- aGGGUgGaGGAGGuGUGcgcgcgGGGGCC-CCCCg -3'
miRNA:   3'- gCCCAgU-CCUCC-CAU------UUCUGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 108492 0.71 0.68516
Target:  5'- gGGGUCccucuaccuGGAcgGGGUGGAGGgguaCUCCCCa -3'
miRNA:   3'- gCCCAGu--------CCU--CCCAUUUCUg---GAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 79117 0.72 0.655413
Target:  5'- gCGGG-CGGGAGG---AGGGCCagUCCCCu -3'
miRNA:   3'- -GCCCaGUCCUCCcauUUCUGG--AGGGG- -5'
3601 5' -56.5 NC_001650.1 + 172987 0.72 0.63548
Target:  5'- uGGG-CAGaGGGGGUAGuGGGCaaCUCCCCc -3'
miRNA:   3'- gCCCaGUC-CUCCCAUU-UCUG--GAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 37243 0.76 0.417791
Target:  5'- uGGG-CAGGcGGGUGGAGugCgCCCCc -3'
miRNA:   3'- gCCCaGUCCuCCCAUUUCugGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 83578 0.76 0.435079
Target:  5'- gGGGgaguaCGGGAGGGUGGAGGCggUCUCCa -3'
miRNA:   3'- gCCCa----GUCCUCCCAUUUCUGg-AGGGG- -5'
3601 5' -56.5 NC_001650.1 + 4677 0.75 0.48929
Target:  5'- gGGGUCcGGGGGGUcuuAAAGACC-CUCUa -3'
miRNA:   3'- gCCCAGuCCUCCCA---UUUCUGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 171384 0.75 0.48929
Target:  5'- gGGGUCcGGGGGGUcuuAAAGACC-CUCUa -3'
miRNA:   3'- gCCCAGuCCUCCCA---UUUCUGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 102770 0.74 0.546454
Target:  5'- aGGGggAGGAGGcGgcgccGGCCUCCCCu -3'
miRNA:   3'- gCCCagUCCUCC-Cauuu-CUGGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 119543 0.74 0.546454
Target:  5'- cCGGGUCgcccgaGGGGGGGUAGGGGCaggUCUCg -3'
miRNA:   3'- -GCCCAG------UCCUCCCAUUUCUGga-GGGG- -5'
3601 5' -56.5 NC_001650.1 + 108715 0.73 0.595641
Target:  5'- gGGGUCGcGGGGGGcgucAAAGACagccucuUCCCCg -3'
miRNA:   3'- gCCCAGU-CCUCCCa---UUUCUGg------AGGGG- -5'
3601 5' -56.5 NC_001650.1 + 6280 0.72 0.63548
Target:  5'- uGGG-CAGaGGGGGUAGuGGGCaaCUCCCCc -3'
miRNA:   3'- gCCCaGUC-CUCCCAUU-UCUG--GAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.