miRNA display CGI


Results 1 - 20 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 130626 0.66 0.834955
Target:  5'- -cGUGggGGuccucaCCGAGGCCAUAGAG-ACc -3'
miRNA:   3'- ucCGCuuCC------GGCUCCGGUGUUUCcUG- -5'
3602 3' -57.8 NC_001650.1 + 57925 0.66 0.843012
Target:  5'- cGGgGAAGGgCGcGGCCG---GGGGCg -3'
miRNA:   3'- uCCgCUUCCgGCuCCGGUguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 49860 0.66 0.873317
Target:  5'- gGGGC-AAGGCCcacccccAGGCCugGuuguagAGGGGCg -3'
miRNA:   3'- -UCCGcUUCCGGc------UCCGGugU------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 60126 0.66 0.843012
Target:  5'- -cGCGGAGGCCGcGuCCGCGGucuccAGGGCc -3'
miRNA:   3'- ucCGCUUCCGGCuCcGGUGUU-----UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 22319 0.66 0.872598
Target:  5'- gAGGCGGGcaccuucGGCUGGGGCaACGugcuGGGCc -3'
miRNA:   3'- -UCCGCUU-------CCGGCUCCGgUGUuu--CCUG- -5'
3602 3' -57.8 NC_001650.1 + 125635 0.66 0.858561
Target:  5'- uGGCGAucgAGGC--GGGCC-CcGAGGGCg -3'
miRNA:   3'- uCCGCU---UCCGgcUCCGGuGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 87047 0.66 0.866041
Target:  5'- cAGGCaGAAGaGCUGGcaguuGGCCAgcAGGGGCu -3'
miRNA:   3'- -UCCG-CUUC-CGGCU-----CCGGUguUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 52556 0.66 0.866041
Target:  5'- gGGGCGgcGGCgGGGGCguucgaguCGGGGGGu -3'
miRNA:   3'- -UCCGCuuCCGgCUCCGgu------GUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 133094 0.66 0.866041
Target:  5'- cGGCGAgccAGGUgCaGGGCC-CAAGGGAg -3'
miRNA:   3'- uCCGCU---UCCG-GcUCCGGuGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 70293 0.66 0.850883
Target:  5'- uGGCGAcGGgCGcAGGCCcaccaaGCAGAGG-Ca -3'
miRNA:   3'- uCCGCUuCCgGC-UCCGG------UGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 130758 0.66 0.866041
Target:  5'- gAGGUGGagaagAGGCUGGGGCCcCugguGGAg -3'
miRNA:   3'- -UCCGCU-----UCCGGCUCCGGuGuuu-CCUg -5'
3602 3' -57.8 NC_001650.1 + 129560 0.66 0.850883
Target:  5'- cGGCGggGGCUGcAGuGCU----GGGGCa -3'
miRNA:   3'- uCCGCuuCCGGC-UC-CGGuguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 124081 0.66 0.866041
Target:  5'- cAGGUGGAcGuGUCaGAGGCCGacGGGGGCg -3'
miRNA:   3'- -UCCGCUU-C-CGG-CUCCGGUguUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 121205 0.66 0.843012
Target:  5'- cGGCGGAcGGUgGAGGCCuuccuGGAg -3'
miRNA:   3'- uCCGCUU-CCGgCUCCGGuguuuCCUg -5'
3602 3' -57.8 NC_001650.1 + 111938 0.66 0.858561
Target:  5'- uGGUGugcGGCgCGGGGCgCAUccAGGACg -3'
miRNA:   3'- uCCGCuu-CCG-GCUCCG-GUGuuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 78272 0.66 0.866041
Target:  5'- uGGgGAuaGCCGAGGCCAuCAAAaaaGACa -3'
miRNA:   3'- uCCgCUucCGGCUCCGGU-GUUUc--CUG- -5'
3602 3' -57.8 NC_001650.1 + 77870 0.66 0.850104
Target:  5'- aGGGUggaGAAGGCCGcgcuGGuCCugGAgcucacgGGGACg -3'
miRNA:   3'- -UCCG---CUUCCGGCu---CC-GGugUU-------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 58940 0.66 0.866041
Target:  5'- gGGGCGcggGAGGCCcggGAGGCgGCGgcGG-Cu -3'
miRNA:   3'- -UCCGC---UUCCGG---CUCCGgUGUuuCCuG- -5'
3602 3' -57.8 NC_001650.1 + 34719 0.66 0.866041
Target:  5'- gAGGCGAcaAGaUgGAGGCUACGAcgacguGGACg -3'
miRNA:   3'- -UCCGCU--UCcGgCUCCGGUGUUu-----CCUG- -5'
3602 3' -57.8 NC_001650.1 + 46018 0.66 0.861577
Target:  5'- cGGGCcaGGAucgcugauugacagcGGCCGcGGCCAaugaGAAGGGCc -3'
miRNA:   3'- -UCCG--CUU---------------CCGGCuCCGGUg---UUUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.