Results 1 - 20 of 279 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3602 | 3' | -57.8 | NC_001650.1 | + | 24008 | 1.09 | 0.002247 |
Target: 5'- uAGGCGAAGGCCGAGGCCACAAAGGACu -3' miRNA: 3'- -UCCGCUUCCGGCUCCGGUGUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 50543 | 0.89 | 0.047247 |
Target: 5'- gGGGCucgaGGAGGCCGGGGCCGgGAGGGACg -3' miRNA: 3'- -UCCG----CUUCCGGCUCCGGUgUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 136379 | 0.87 | 0.065031 |
Target: 5'- cGGGUcGGGGUCGAGGCCGCGGGGGGCg -3' miRNA: 3'- -UCCGcUUCCGGCUCCGGUGUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 50024 | 0.79 | 0.211135 |
Target: 5'- gAGGaGGAGGCCcGGGCCugAGGGGGCu -3' miRNA: 3'- -UCCgCUUCCGGcUCCGGugUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 21799 | 0.79 | 0.211135 |
Target: 5'- aGGGCGccGGCCGAGGCC-CcGGGGAg -3' miRNA: 3'- -UCCGCuuCCGGCUCCGGuGuUUCCUg -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 68805 | 0.79 | 0.221604 |
Target: 5'- gGGGC--AGGCCGGGGCCcucgcuCGAGGGGCg -3' miRNA: 3'- -UCCGcuUCCGGCUCCGGu-----GUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 82396 | 0.79 | 0.225371 |
Target: 5'- gAGGCGguGGCCGAgcuGGCCaagcccgccaacugGCAGGGGACg -3' miRNA: 3'- -UCCGCuuCCGGCU---CCGG--------------UGUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 56686 | 0.79 | 0.227002 |
Target: 5'- uGGGCGccagcuGGGCUGGGGUCAgCGAGGGGCg -3' miRNA: 3'- -UCCGCu-----UCCGGCUCCGGU-GUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 151322 | 0.78 | 0.238133 |
Target: 5'- gAGGUGGAGGUCGAGGCaaaGGAGGAg -3' miRNA: 3'- -UCCGCUUCCGGCUCCGgugUUUCCUg -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 73705 | 0.78 | 0.249717 |
Target: 5'- uGGCGAGcuggccguGGCUGAGGCC-CGGGGGGCc -3' miRNA: 3'- uCCGCUU--------CCGGCUCCGGuGUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 129980 | 0.78 | 0.255681 |
Target: 5'- uGGCGcGGGCCcuGAGGCUGCuGAGGGCg -3' miRNA: 3'- uCCGCuUCCGG--CUCCGGUGuUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 61079 | 0.77 | 0.287263 |
Target: 5'- gAGGUGcuGGCCucGGCCACcGAGGACu -3' miRNA: 3'- -UCCGCuuCCGGcuCCGGUGuUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 106109 | 0.77 | 0.287263 |
Target: 5'- uGGGCGcucGGGCCu-GGCCACAAGGGGg -3' miRNA: 3'- -UCCGCu--UCCGGcuCCGGUGUUUCCUg -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 59868 | 0.77 | 0.300731 |
Target: 5'- cAGGC---GGCCGAGGCgucCGCGAAGGACc -3' miRNA: 3'- -UCCGcuuCCGGCUCCG---GUGUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 181904 | 0.76 | 0.314681 |
Target: 5'- gGGGuCGcGGGGuuGAGGCCGCAgcGGGCu -3' miRNA: 3'- -UCC-GC-UUCCggCUCCGGUGUuuCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 15197 | 0.76 | 0.314681 |
Target: 5'- gGGGuCGcGGGGuuGAGGCCGCAgcGGGCu -3' miRNA: 3'- -UCC-GC-UUCCggCUCCGGUGUuuCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 111004 | 0.76 | 0.321837 |
Target: 5'- cAGGCGucGGCgCGAgGGUCGCGAgaGGGACa -3' miRNA: 3'- -UCCGCuuCCG-GCU-CCGGUGUU--UCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 98038 | 0.76 | 0.326918 |
Target: 5'- cGGGCGAGGGCgaugcuucuggggaCGAgGGUCACGAAGGGg -3' miRNA: 3'- -UCCGCUUCCG--------------GCU-CCGGUGUUUCCUg -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 50233 | 0.76 | 0.336512 |
Target: 5'- cGGGCGGAGGgCGGGGaCCAUGcgcgacAGGGGCg -3' miRNA: 3'- -UCCGCUUCCgGCUCC-GGUGU------UUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 150486 | 0.76 | 0.344031 |
Target: 5'- cAGGUGGAGGCgGAGGCCugGGuuuAGG-Cu -3' miRNA: 3'- -UCCGCUUCCGgCUCCGGugUU---UCCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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