miRNA display CGI


Results 1 - 20 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 83380 0.75 0.386688
Target:  5'- uGGCG--GGCCGAGGCCcugccgucgguaccaGCuGAGGACg -3'
miRNA:   3'- uCCGCuuCCGGCUCCGG---------------UGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 150486 0.76 0.344031
Target:  5'- cAGGUGGAGGCgGAGGCCugGGuuuAGG-Cu -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGugUU---UCCuG- -5'
3602 3' -57.8 NC_001650.1 + 130007 0.75 0.351669
Target:  5'- cGGCGcGGGaCGAGGCCGCGggccucAAGGGCc -3'
miRNA:   3'- uCCGCuUCCgGCUCCGGUGU------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 30707 0.75 0.359427
Target:  5'- gGGGCGGgagagcgagAGG-CGGGGCCGCG-AGGACg -3'
miRNA:   3'- -UCCGCU---------UCCgGCUCCGGUGUuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 122219 0.75 0.367304
Target:  5'- cGGCGAGGGagcuggugcCCGAGGCCG---GGGGCg -3'
miRNA:   3'- uCCGCUUCC---------GGCUCCGGUguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 142784 0.75 0.367304
Target:  5'- aGGGCGgcGGCCG-GGCCcagACGGGGGuCa -3'
miRNA:   3'- -UCCGCuuCCGGCuCCGG---UGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 124296 0.75 0.375299
Target:  5'- uGGC-AGGGaCGAGGCCGCGgcGGACg -3'
miRNA:   3'- uCCGcUUCCgGCUCCGGUGUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 128328 0.75 0.375299
Target:  5'- gAGGCGguGGgCGAGGUgAUggGGGACc -3'
miRNA:   3'- -UCCGCuuCCgGCUCCGgUGuuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 76192 0.75 0.38341
Target:  5'- cAGGUGGAGGCCGAGuGCagggGCGucucccuGGGACg -3'
miRNA:   3'- -UCCGCUUCCGGCUC-CGg---UGUu------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 150426 0.76 0.344031
Target:  5'- cAGGUGGAGGCgGAGGCCugGGuuuAGG-Cu -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGugUU---UCCuG- -5'
3602 3' -57.8 NC_001650.1 + 50233 0.76 0.336512
Target:  5'- cGGGCGGAGGgCGGGGaCCAUGcgcgacAGGGGCg -3'
miRNA:   3'- -UCCGCUUCCgGCUCC-GGUGU------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 111004 0.76 0.321837
Target:  5'- cAGGCGucGGCgCGAgGGUCGCGAgaGGGACa -3'
miRNA:   3'- -UCCGCuuCCG-GCU-CCGGUGUU--UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 21799 0.79 0.211135
Target:  5'- aGGGCGccGGCCGAGGCC-CcGGGGAg -3'
miRNA:   3'- -UCCGCuuCCGGCUCCGGuGuUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 68805 0.79 0.221604
Target:  5'- gGGGC--AGGCCGGGGCCcucgcuCGAGGGGCg -3'
miRNA:   3'- -UCCGcuUCCGGCUCCGGu-----GUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 82396 0.79 0.225371
Target:  5'- gAGGCGguGGCCGAgcuGGCCaagcccgccaacugGCAGGGGACg -3'
miRNA:   3'- -UCCGCuuCCGGCU---CCGG--------------UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 151322 0.78 0.238133
Target:  5'- gAGGUGGAGGUCGAGGCaaaGGAGGAg -3'
miRNA:   3'- -UCCGCUUCCGGCUCCGgugUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 129980 0.78 0.255681
Target:  5'- uGGCGcGGGCCcuGAGGCUGCuGAGGGCg -3'
miRNA:   3'- uCCGCuUCCGG--CUCCGGUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 106109 0.77 0.287263
Target:  5'- uGGGCGcucGGGCCu-GGCCACAAGGGGg -3'
miRNA:   3'- -UCCGCu--UCCGGcuCCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 15197 0.76 0.314681
Target:  5'- gGGGuCGcGGGGuuGAGGCCGCAgcGGGCu -3'
miRNA:   3'- -UCC-GC-UUCCggCUCCGGUGUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 181904 0.76 0.314681
Target:  5'- gGGGuCGcGGGGuuGAGGCCGCAgcGGGCu -3'
miRNA:   3'- -UCC-GC-UUCCggCUCCGGUGUuuCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.