miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 5' -66.6 NC_001650.1 + 23973 1.11 0.000389
Target:  5'- aGCGCCCCCCUCGGGCGGGUCUCCGCCc -3'
miRNA:   3'- -CGCGGGGGGAGCCCGCCCAGAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 31496 0.84 0.03458
Target:  5'- aGCGCCCCCgUCGGGCuugaGGGgCUCCGCg -3'
miRNA:   3'- -CGCGGGGGgAGCCCG----CCCaGAGGCGg -5'
3602 5' -66.6 NC_001650.1 + 36016 0.82 0.048918
Target:  5'- cGCGCCCCCCU-GGcGCGGGaCggCCGCCg -3'
miRNA:   3'- -CGCGGGGGGAgCC-CGCCCaGa-GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 158352 0.79 0.076046
Target:  5'- gGCGCCCCCCUCGgcGGCcgGGGUCagCGCg -3'
miRNA:   3'- -CGCGGGGGGAGC--CCG--CCCAGagGCGg -5'
3602 5' -66.6 NC_001650.1 + 17991 0.77 0.101617
Target:  5'- aGCGCCCCCCaCGuGG-GGGcgCUCUGCCa -3'
miRNA:   3'- -CGCGGGGGGaGC-CCgCCCa-GAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 57268 0.75 0.158028
Target:  5'- uGCGCCCCgcaugccuccccucCCUCGGGCu-GUCUCUGCUc -3'
miRNA:   3'- -CGCGGGG--------------GGAGCCCGccCAGAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 94616 0.75 0.159131
Target:  5'- uCGCCCUggcggucucucgCUUCGGGCGGGaCUuuGCCg -3'
miRNA:   3'- cGCGGGG------------GGAGCCCGCCCaGAggCGG- -5'
3602 5' -66.6 NC_001650.1 + 133142 0.73 0.191208
Target:  5'- cGCGCCgcggggggaCCCUCGGGCGGcuguaGUCUCgcggagcgggCGCCa -3'
miRNA:   3'- -CGCGGg--------GGGAGCCCGCC-----CAGAG----------GCGG- -5'
3602 5' -66.6 NC_001650.1 + 131872 0.73 0.203714
Target:  5'- cCGCCCCCCUCaGGGaGGGggcgCgcaggcaggcggCCGCCa -3'
miRNA:   3'- cGCGGGGGGAG-CCCgCCCa---Ga-----------GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 89309 0.73 0.204633
Target:  5'- aUGCCCCCCggUGGGCGGucGUCccCCGCg -3'
miRNA:   3'- cGCGGGGGGa-GCCCGCC--CAGa-GGCGg -5'
3602 5' -66.6 NC_001650.1 + 134333 0.73 0.209287
Target:  5'- gGCGCCCCCCgCGGGCc---CUCCGUg -3'
miRNA:   3'- -CGCGGGGGGaGCCCGcccaGAGGCGg -5'
3602 5' -66.6 NC_001650.1 + 71476 0.72 0.218868
Target:  5'- aCGCCUCCa-CGGGCugguacaggGGGuUCUCCGCCc -3'
miRNA:   3'- cGCGGGGGgaGCCCG---------CCC-AGAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 127695 0.72 0.223798
Target:  5'- gGCGCCCCCCUCcccGGCcccaucGUCcCCGCCc -3'
miRNA:   3'- -CGCGGGGGGAGc--CCGcc----CAGaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 125411 0.72 0.23394
Target:  5'- gGgGCCCCgucgCCUCcgGGGCGGGaUCUucuggCCGCCu -3'
miRNA:   3'- -CgCGGGG----GGAG--CCCGCCC-AGA-----GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 81687 0.72 0.239154
Target:  5'- cCGUCCCCaggaCGGGCGGGa-UCCGCUc -3'
miRNA:   3'- cGCGGGGGga--GCCCGCCCagAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 88207 0.72 0.244465
Target:  5'- uUGCCCgCCUCGgccGGCGaGGcCUCCGCg -3'
miRNA:   3'- cGCGGGgGGAGC---CCGC-CCaGAGGCGg -5'
3602 5' -66.6 NC_001650.1 + 50453 0.71 0.272501
Target:  5'- gGCGCCCCUgUCGcGCauGGUCcCCGCCc -3'
miRNA:   3'- -CGCGGGGGgAGCcCGc-CCAGaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 142949 0.71 0.278409
Target:  5'- cCGCCUCCgcaaaCUcCGGGCGccuGGUCUCgGCCg -3'
miRNA:   3'- cGCGGGGG-----GA-GCCCGC---CCAGAGgCGG- -5'
3602 5' -66.6 NC_001650.1 + 107703 0.71 0.29053
Target:  5'- aGCGCCCUguaCUCuGGGaggGGGUC-CCGCUg -3'
miRNA:   3'- -CGCGGGGg--GAG-CCCg--CCCAGaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 69280 0.7 0.296744
Target:  5'- cGCGCUCCCCUacugccGCGaGGUCUCCcuggagGCCg -3'
miRNA:   3'- -CGCGGGGGGAgcc---CGC-CCAGAGG------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.