miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 5' -66.6 NC_001650.1 + 22444 0.68 0.414817
Target:  5'- cGCGCCCaCCCUCcuGGGCuucgugaGGGUgauggacgggagcgCggcgCCGCCc -3'
miRNA:   3'- -CGCGGG-GGGAG--CCCG-------CCCA--------------Ga---GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 17436 0.68 0.386866
Target:  5'- -aGCCCCuUUUCGGGgGGGUUuguggggCUGCCu -3'
miRNA:   3'- cgCGGGG-GGAGCCCgCCCAGa------GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 184143 0.68 0.386866
Target:  5'- -aGCCCCuUUUCGGGgGGGUUuguggggCUGCCu -3'
miRNA:   3'- cgCGGGG-GGAGCCCgCCCAGa------GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 111490 0.68 0.386866
Target:  5'- -gGCCaCCCC-CGGGCuGGugaUCcCCGCCg -3'
miRNA:   3'- cgCGG-GGGGaGCCCGcCC---AGaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 618 0.68 0.394505
Target:  5'- cCGCCCuCCCcCGGGCccccauuggucGGUCUCCcCCg -3'
miRNA:   3'- cGCGGG-GGGaGCCCGc----------CCAGAGGcGG- -5'
3602 5' -66.6 NC_001650.1 + 167325 0.68 0.394505
Target:  5'- cCGCCCuCCCcCGGGCccccauuggucGGUCUCCcCCg -3'
miRNA:   3'- cGCGGG-GGGaGCCCGc----------CCAGAGGcGG- -5'
3602 5' -66.6 NC_001650.1 + 101871 0.68 0.402241
Target:  5'- -aGCCUCCgUgCaGGCGGGcggCUUCGCCa -3'
miRNA:   3'- cgCGGGGGgA-GcCCGCCCa--GAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 58560 0.68 0.402241
Target:  5'- uCGCCCCCCUuggcccCGGGCaGGGcgUCCGg- -3'
miRNA:   3'- cGCGGGGGGA------GCCCG-CCCagAGGCgg -5'
3602 5' -66.6 NC_001650.1 + 21772 0.68 0.410073
Target:  5'- gGCGCCCCCU---GGUGGGgga-CGCCg -3'
miRNA:   3'- -CGCGGGGGGagcCCGCCCagagGCGG- -5'
3602 5' -66.6 NC_001650.1 + 22629 0.69 0.364542
Target:  5'- aGCGCCCCCagcgcgCGGG-GGGcgCguaCGCCu -3'
miRNA:   3'- -CGCGGGGGga----GCCCgCCCa-Gag-GCGG- -5'
3602 5' -66.6 NC_001650.1 + 47471 0.69 0.357301
Target:  5'- uCGCCCCCCUaaaucucaGuGGCcgGGGUCUCUGaCa -3'
miRNA:   3'- cGCGGGGGGAg-------C-CCG--CCCAGAGGCgG- -5'
3602 5' -66.6 NC_001650.1 + 67538 0.7 0.30306
Target:  5'- aUGCCCCgagCGGGCGGG-CUCgCGCg -3'
miRNA:   3'- cGCGGGGggaGCCCGCCCaGAG-GCGg -5'
3602 5' -66.6 NC_001650.1 + 17991 0.77 0.101617
Target:  5'- aGCGCCCCCCaCGuGG-GGGcgCUCUGCCa -3'
miRNA:   3'- -CGCGGGGGGaGC-CCgCCCa-GAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 57268 0.75 0.158028
Target:  5'- uGCGCCCCgcaugccuccccucCCUCGGGCu-GUCUCUGCUc -3'
miRNA:   3'- -CGCGGGG--------------GGAGCCCGccCAGAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 94616 0.75 0.159131
Target:  5'- uCGCCCUggcggucucucgCUUCGGGCGGGaCUuuGCCg -3'
miRNA:   3'- cGCGGGG------------GGAGCCCGCCCaGAggCGG- -5'
3602 5' -66.6 NC_001650.1 + 134333 0.73 0.209287
Target:  5'- gGCGCCCCCCgCGGGCc---CUCCGUg -3'
miRNA:   3'- -CGCGGGGGGaGCCCGcccaGAGGCGg -5'
3602 5' -66.6 NC_001650.1 + 81687 0.72 0.239154
Target:  5'- cCGUCCCCaggaCGGGCGGGa-UCCGCUc -3'
miRNA:   3'- cGCGGGGGga--GCCCGCCCagAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 88207 0.72 0.244465
Target:  5'- uUGCCCgCCUCGgccGGCGaGGcCUCCGCg -3'
miRNA:   3'- cGCGGGgGGAGC---CCGC-CCaGAGGCGg -5'
3602 5' -66.6 NC_001650.1 + 23217 0.7 0.302424
Target:  5'- cGgGCCCCCCUCGGaCGcccgggaGGUC-CUGCUg -3'
miRNA:   3'- -CgCGGGGGGAGCCcGC-------CCAGaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 42389 0.7 0.30306
Target:  5'- uGCaGCCCCCC-CGuGGCaGaGuUCUCUGCCa -3'
miRNA:   3'- -CG-CGGGGGGaGC-CCGcC-C-AGAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.