miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 5' -66.6 NC_001650.1 + 618 0.68 0.394505
Target:  5'- cCGCCCuCCCcCGGGCccccauuggucGGUCUCCcCCg -3'
miRNA:   3'- cGCGGG-GGGaGCCCGc----------CCAGAGGcGG- -5'
3602 5' -66.6 NC_001650.1 + 3657 0.66 0.528646
Target:  5'- cCGUCCCCgUCacgGGGCGucccgCUCUGCCa -3'
miRNA:   3'- cGCGGGGGgAG---CCCGCcca--GAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 17436 0.68 0.386866
Target:  5'- -aGCCCCuUUUCGGGgGGGUUuguggggCUGCCu -3'
miRNA:   3'- cgCGGGG-GGAGCCCgCCCAGa------GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 17991 0.77 0.101617
Target:  5'- aGCGCCCCCCaCGuGG-GGGcgCUCUGCCa -3'
miRNA:   3'- -CGCGGGGGGaGC-CCgCCCa-GAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 21772 0.68 0.410073
Target:  5'- gGCGCCCCCU---GGUGGGgga-CGCCg -3'
miRNA:   3'- -CGCGGGGGGagcCCGCCCagagGCGG- -5'
3602 5' -66.6 NC_001650.1 + 22444 0.68 0.414817
Target:  5'- cGCGCCCaCCCUCcuGGGCuucgugaGGGUgauggacgggagcgCggcgCCGCCc -3'
miRNA:   3'- -CGCGGG-GGGAG--CCCG-------CCCA--------------Ga---GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 22629 0.69 0.364542
Target:  5'- aGCGCCCCCagcgcgCGGG-GGGcgCguaCGCCu -3'
miRNA:   3'- -CGCGGGGGga----GCCCgCCCa-Gag-GCGG- -5'
3602 5' -66.6 NC_001650.1 + 22837 0.66 0.502
Target:  5'- cGCGCCCCCCgCGcGCuGGGggcgCUgaaagaagUCGCCc -3'
miRNA:   3'- -CGCGGGGGGaGCcCG-CCCa---GA--------GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 23217 0.7 0.302424
Target:  5'- cGgGCCCCCCUCGGaCGcccgggaGGUC-CUGCUg -3'
miRNA:   3'- -CgCGGGGGGAGCCcGC-------CCAGaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 23973 1.11 0.000389
Target:  5'- aGCGCCCCCCUCGGGCGGGUCUCCGCCc -3'
miRNA:   3'- -CGCGGGGGGAGCCCGCCCAGAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 27585 0.67 0.467429
Target:  5'- cUGCCCUCCUuccCGGGCGuG-C-CCGCCu -3'
miRNA:   3'- cGCGGGGGGA---GCCCGCcCaGaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 29241 0.68 0.394505
Target:  5'- cGCGCCCCgagggCGuGCGGGUaCUCCucgGCCg -3'
miRNA:   3'- -CGCGGGGgga--GCcCGCCCA-GAGG---CGG- -5'
3602 5' -66.6 NC_001650.1 + 30896 0.66 0.536743
Target:  5'- cCGCCCCCCUcccgcucgccccgCGGcGCGcGcgUCCGCCc -3'
miRNA:   3'- cGCGGGGGGA-------------GCC-CGCcCagAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 31496 0.84 0.03458
Target:  5'- aGCGCCCCCgUCGGGCuugaGGGgCUCCGCg -3'
miRNA:   3'- -CGCGGGGGgAGCCCG----CCCaGAGGCGg -5'
3602 5' -66.6 NC_001650.1 + 31746 0.67 0.458978
Target:  5'- uCGCCCCCCgc-GGCaGG--UCCGCCc -3'
miRNA:   3'- cGCGGGGGGagcCCGcCCagAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 36016 0.82 0.048918
Target:  5'- cGCGCCCCCCU-GGcGCGGGaCggCCGCCg -3'
miRNA:   3'- -CGCGGGGGGAgCC-CGCCCaGa-GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 40581 0.68 0.386866
Target:  5'- cGCGCCCCCCUCguGGGUguuuGGGaaCUCgGaCUg -3'
miRNA:   3'- -CGCGGGGGGAG--CCCG----CCCa-GAGgC-GG- -5'
3602 5' -66.6 NC_001650.1 + 42389 0.7 0.30306
Target:  5'- uGCaGCCCCCC-CGuGGCaGaGuUCUCUGCCa -3'
miRNA:   3'- -CG-CGGGGGGaGC-CCGcC-C-AGAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 43115 0.67 0.458978
Target:  5'- cGCGUCCCCUUUGGaCGguGGUCUuuagacuaucCCGCUg -3'
miRNA:   3'- -CGCGGGGGGAGCCcGC--CCAGA----------GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 47471 0.69 0.357301
Target:  5'- uCGCCCCCCUaaaucucaGuGGCcgGGGUCUCUGaCa -3'
miRNA:   3'- cGCGGGGGGAg-------C-CCG--CCCAGAGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.