Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 24420 | 1.08 | 0.00145 |
Target: 5'- gAGGUACUCCACCGCCGCUGAGGCGGAg -3' miRNA: 3'- -UCCAUGAGGUGGCGGCGACUCCGCCU- -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 121636 | 0.78 | 0.173813 |
Target: 5'- gAGGUGCUgCACCGUCGCgugcaggugcuUGAGGCGcGAg -3' miRNA: 3'- -UCCAUGAgGUGGCGGCG-----------ACUCCGC-CU- -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 108545 | 0.74 | 0.317455 |
Target: 5'- cGGGgcCUcCCGCCGCgGCUGGGGgaGGAg -3' miRNA: 3'- -UCCauGA-GGUGGCGgCGACUCCg-CCU- -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 155660 | 0.74 | 0.331586 |
Target: 5'- gGGGUcuuugACggugCCGCCGCCGgagGGGGCGGGg -3' miRNA: 3'- -UCCA-----UGa---GGUGGCGGCga-CUCCGCCU- -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 89469 | 0.73 | 0.361217 |
Target: 5'- gGGGUcCUgCGCUggGCCGCcGAGGCGGGg -3' miRNA: 3'- -UCCAuGAgGUGG--CGGCGaCUCCGCCU- -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 114919 | 0.71 | 0.442979 |
Target: 5'- cGGGUugccCUCCACCGgC-UUGAGGUGGAc -3' miRNA: 3'- -UCCAu---GAGGUGGCgGcGACUCCGCCU- -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 48912 | 0.71 | 0.442979 |
Target: 5'- gAGGUcACUcCCGCCGCC-CUGAcGGUGGu -3' miRNA: 3'- -UCCA-UGA-GGUGGCGGcGACU-CCGCCu -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 158579 | 0.71 | 0.446463 |
Target: 5'- gAGGUAC-CCGCCaccgcgcugaccccgGCCGCcGAGGgGGGc -3' miRNA: 3'- -UCCAUGaGGUGG---------------CGGCGaCUCCgCCU- -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 110817 | 0.71 | 0.487579 |
Target: 5'- gGGGUccgcuGCUgCUGuuGCUGCUGGGGCGGc -3' miRNA: 3'- -UCCA-----UGA-GGUggCGGCGACUCCGCCu -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 94926 | 0.7 | 0.515333 |
Target: 5'- cAGGaGC-CCAaagaGCCGCUcgGAGGCGGAg -3' miRNA: 3'- -UCCaUGaGGUgg--CGGCGA--CUCCGCCU- -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 142329 | 0.7 | 0.524727 |
Target: 5'- aGGaGUGCUCCAggaGCCGCgcgaGGGCGGGu -3' miRNA: 3'- -UC-CAUGAGGUgg-CGGCGac--UCCGCCU- -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 142555 | 0.7 | 0.543704 |
Target: 5'- cAGGaAgUCCGCgGCCGCcaUGAaGGUGGAg -3' miRNA: 3'- -UCCaUgAGGUGgCGGCG--ACU-CCGCCU- -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 26265 | 0.7 | 0.543704 |
Target: 5'- cGGcGCUCagGCCGCCGCUGuAGGCc-- -3' miRNA: 3'- uCCaUGAGg-UGGCGGCGAC-UCCGccu -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 30909 | 0.69 | 0.572567 |
Target: 5'- uGGaGCUCgGCCGCgGaCaGGGGCGGGg -3' miRNA: 3'- uCCaUGAGgUGGCGgC-GaCUCCGCCU- -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 136060 | 0.69 | 0.582273 |
Target: 5'- gAGaGUACUCCcccagccccGCgGCCGCcaUGAaGGCGGGg -3' miRNA: 3'- -UC-CAUGAGG---------UGgCGGCG--ACU-CCGCCU- -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 62342 | 0.69 | 0.601778 |
Target: 5'- uGGGUGCUCCAgggaacagccuCCuCCGagGAGGUGGAg -3' miRNA: 3'- -UCCAUGAGGU-----------GGcGGCgaCUCCGCCU- -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 30514 | 0.68 | 0.611564 |
Target: 5'- cGGUGC-CCugCGCguccugcuuCGCgGAGGCGGc -3' miRNA: 3'- uCCAUGaGGugGCG---------GCGaCUCCGCCu -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 53042 | 0.68 | 0.611564 |
Target: 5'- gGGGUAuuuCUCCccaaaaugACgGCCGC-GAGGCGGu -3' miRNA: 3'- -UCCAU---GAGG--------UGgCGGCGaCUCCGCCu -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 79089 | 0.68 | 0.631173 |
Target: 5'- cGGGccugGCUCCgggcGCgGCCGCUcggcGGGCGGGa -3' miRNA: 3'- -UCCa---UGAGG----UGgCGGCGAc---UCCGCCU- -5' |
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3603 | 5' | -60.7 | NC_001650.1 | + | 47952 | 0.68 | 0.640982 |
Target: 5'- uGGGUGCguggCCAUCG-CGCUGuGGCuGAu -3' miRNA: 3'- -UCCAUGa---GGUGGCgGCGACuCCGcCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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